Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1906 |
Symbol | |
ID | 5610802 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2291055 |
End bp | 2291720 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640932792 |
Product | Ni/Fe-hydrogenase, b-type cytochrome subunit |
Protein accession | YP_001473645 |
Protein GI | 157375045 |
COG category | [C] Energy production and conversion |
COG ID | [COG1969] Ni,Fe-hydrogenase I cytochrome b subunit |
TIGRFAM ID | [TIGR02125] Ni/Fe-hydrogenase, b-type cytochrome subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0142953 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCATT CTGCGACCCA TACTAGAGAC TTGATCTTCA GCCCTGCGAT CCGGATTTTT CACTGGCTCC GGGCACTGTC GATACTCGTT CTGGTTATCA CAGGATTTTA TATATCTTGG CCATTTTTAG TGGCACCTGA AACTAATGAT ATTCAGGTTC AGAGCTATAT CCGCTTTGCT CACTTAGTGT TTGGCTTTGC GTTAACGGCC ATCACCCTGG TGCGCTTTTA CCTCTTCTTC TTCGGCAAGA GCGACATTGA ACGTCGATCT TTCCGAGATG TGTCGAGTGT AAGTAGCTGG GTAAAAAACT TGAAATCATA CTTATGGATG GGACACCTGA ATAAAGCGGG TGTCTATGGA CCATTACAGT TCACAACCTA TGTATTGATC TCGTTGATGG CTCTGATTAT CTGTATCACT GGCCTGGTAC TGTACGCCAA CGTCTACCAC CTTGGAATGG GTGGCATGAT GTGGGATGCA GCAGCTTGGA TCACCGCACA GATGGGTGGA CTGGCACAAG TAAGAATTTG GCATCACTAC CTTACTTGGG TATTTATCAT CTTCGTTCTT GTGCACGTAT ACATGGCCGT ATGGTCAGGT ATCAGGTTCA AGCATAACTC TGTAGATTCA ATTGTCTCTG GTTATGATTA CCACAAGAAG CACTAG
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Protein sequence | MNHSATHTRD LIFSPAIRIF HWLRALSILV LVITGFYISW PFLVAPETND IQVQSYIRFA HLVFGFALTA ITLVRFYLFF FGKSDIERRS FRDVSSVSSW VKNLKSYLWM GHLNKAGVYG PLQFTTYVLI SLMALIICIT GLVLYANVYH LGMGGMMWDA AAWITAQMGG LAQVRIWHHY LTWVFIIFVL VHVYMAVWSG IRFKHNSVDS IVSGYDYHKK H
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