Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1857 |
Symbol | tolB |
ID | 5611713 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2233716 |
End bp | 2235044 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640932733 |
Product | translocation protein TolB |
Protein accession | YP_001473596 |
Protein GI | 157374996 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00113428 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGACTT TTGGAAAATG GCTCGTCTTA GGGCTGGTTA TATTAAGCTC ACCTGTAAGA GCGGCACTGG ATATCGTGAT AACCGAAGGT ATCGATGCGG CGAGGCCTAT CGCAGTGGTT CCTTTTGTCT GGCAAGGGCA GGGACCCGCA CCGCAGCAGA TCTCTGATGT CGTTATGTCT GATCTGACTC GAAGTGGCAC GTTTAAAACC TTGGATGAGC TGAGTCTGCC GCAACGAAAC ATTAGTGCTA TTTCTCAGTT TCAAGCTAAA GATTGGGCGA ATGTTGGTGC CGAAGCTGTG GTCATGGGGG CGATTAAGCC TTATGGCGAA GATAAATATT TGGTGAGCTT CGACCTGGTC GATCTTGTAA AAGCACAGAT GCAATCGGGT ACGGGCCCTC AGTCAAAACA GGAGTTCTTG ATTGATAGTC GCGAAACCGT TATTTCATCT GCTCAGTTCA GACAATATGG TCACCGCATT AGTGATATTA TCTACGAAAA GCTAACGGGT ATCCGTGGTG CTTTCTTGAC TCGCATTGCT TATGTTGTCG TTAAGCATGG TGAGAAGTCA CCGTACCAGT TGATGATTTC AGATTACGAC GGGCATAATG AACAGATGCT GTTACGCTCT CCGGAGCCCT TGATGTCACC ATCATGGTCG CCCGATGGAC GACAGCTTGC TTATGTGAGT TTCGAAAACA AAAAAGCGGA AATTTTCATA CAGGATATTT ATACGCAATC TAGAAGTAAA ATTACCAGCT TTGCCGGAAT CAATGGCGCC CCTGTTTTTT CTCCCGATGG AAAAAAACTG GCTTTGACTC TGTCTAAAGA CGGCCAACCT GAGATTTATG TCGTTGATAT CAGCACTAAA GCACTTAAAC GTGTCACAAA TCATTATGCT ATCGATACAG AGGCATCTTG GTTTCCTGAT GGAAAATCTT TGATCTTCAC CTCGGAGCGC GGCGGTCGCC CTCAAATTTA CAAAGTGACA CTGGCCTCTG GTAAGGTGCA AAGAATGACA TTTGAAGGGG AGTGGAACTT AGGTGGTTCA ATTCTACCTG ATGGTCGAAG CATGATTTTT GTGAACAGAA CAAATGGTAA ATATAATATT GCCAGAATGG ATCTGGAAAC ACGCTTTATG CAGGTACTGA CATCGACACG TCTTGATGAA TCACCTAGCG TAGCACCAAA TGGAACTATG GTGATTTACG GAACGACCTA CCAAGGTAAG CAAGTTTTAG CAGCGGTTTC AACGGATGGA CGATTTAAAG CCCGACTGCC AACGGGTCAA GGGGAAGTTA AATCACCTTC TTGGTCACCT TTTCTCTAA
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Protein sequence | MKTFGKWLVL GLVILSSPVR AALDIVITEG IDAARPIAVV PFVWQGQGPA PQQISDVVMS DLTRSGTFKT LDELSLPQRN ISAISQFQAK DWANVGAEAV VMGAIKPYGE DKYLVSFDLV DLVKAQMQSG TGPQSKQEFL IDSRETVISS AQFRQYGHRI SDIIYEKLTG IRGAFLTRIA YVVVKHGEKS PYQLMISDYD GHNEQMLLRS PEPLMSPSWS PDGRQLAYVS FENKKAEIFI QDIYTQSRSK ITSFAGINGA PVFSPDGKKL ALTLSKDGQP EIYVVDISTK ALKRVTNHYA IDTEASWFPD GKSLIFTSER GGRPQIYKVT LASGKVQRMT FEGEWNLGGS ILPDGRSMIF VNRTNGKYNI ARMDLETRFM QVLTSTRLDE SPSVAPNGTM VIYGTTYQGK QVLAAVSTDG RFKARLPTGQ GEVKSPSWSP FL
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