| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1853 |
|---|
| Symbol | |
|---|
| ID | 5611923 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2231231 |
|---|
| End bp | 2231629 |
|---|
| Gene Length | 399 bp |
|---|
| Protein Length | 132 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640932729 |
|---|
| Product | 4-hydroxybenzoyl-CoA thioesterase |
|---|
| Protein accession | YP_001473592 |
|---|
| Protein GI | 157374992 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0824] Predicted thioesterase |
|---|
| TIGRFAM ID | [TIGR00051] acyl-CoA thioester hydrolase, YbgC/YbaW family
[TIGR02799] tol-pal system-associated acyl-CoA thioesterase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0107665 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.755502 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCGCT GGCCTATTTC AGTCTATTAC GAAGATACCG ATGCCGGTGG TGTCGTTTAT
CATTCAAATT ATCTTAATTT TTTTGAACGA GCCAGAACCG AATGGTTGAA AGATATGGGA
GTGAAACAGA CCGCTCTGTT AGCTGAAGAT ATTGCGTTTG TTGTCAAGAA GGCCGAATTG
GATTTTTGTA AACCTGCGAA GTTCGAACAG GACCTTATTG TAGAAACTGT TGTCACAAAG
ATTAAGAAAG CGTCGTTGAT GTTTAATCAA CGTCTAGTCG ATAAGCAGGG CGTTTTATAT
TGTGAAGGTA ACATCTTAGT TGCTTGTATC ACTTTATCTT GTATGAAACC TCGTGCCATT
CCCCAAAATA TTGCTCAGGA GTTTACAGGT GGAAGCTGA
|
|---|
| Protein sequence | MFRWPISVYY EDTDAGGVVY HSNYLNFFER ARTEWLKDMG VKQTALLAED IAFVVKKAEL
DFCKPAKFEQ DLIVETVVTK IKKASLMFNQ RLVDKQGVLY CEGNILVACI TLSCMKPRAI
PQNIAQEFTG GS
|
|---|
| |