Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1804 |
Symbol | |
ID | 5612714 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2172578 |
End bp | 2174047 |
Gene Length | 1470 bp |
Protein Length | 489 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640932679 |
Product | hypothetical protein |
Protein accession | YP_001473543 |
Protein GI | 157374943 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG2267] Lysophospholipase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACGA TCGTTATCGG TTCGACTAAA CACCTTATTC TGGCGCTCAT TTATGCTTCG CTTGGAATAA CAGTCGCATT GCTTGCCGTG GGAGTCTGGT TGTTAAATTC CAGGCCAGAA CTTGATATTT GGCATACAAC ACAATTGACT TCTCAGTATA ACAGAAGCCT TGAACTTACT AATTTCACAG AATATCAAAA ACTTGAAAAG CAGCTTTTTG AAGAACTCGA GTCCGAGATC TACAGTCACA CCTCCGGTCC ACATTCATCA ATATTAAATC GTTATGTACA TGGCAGTTTA GCCGCCCCTG AAAAGTGGCG AAATGATTGG AATAGAACTT ACGAGTGGCC GCTGGATGAT GCCAAATTTG GTGTCCTTCT GCTTCATGGC ATGTCTGACT CTCCCTACGC CTTATCCCAC GTAGCAAAGC ATTTTGAGGG GAAGGCGCAT CTGCTTGGTT TGAGGCTACC GGGCCATGGC ACCATACCTT CGGGGCTGGT GGATCTTGAA TGGCAAGATA TGGCATCTGC GGTATCGCTT GCCACCAGGC ATATGCGAGA TGTACTGAAA GGGCGGCCAC TGTATGTGGT TGGATTTTCG ACGGGGGCAG CCTTGGCGTT AAACCATGAA TTGGAGCGAC TCTCGAAAAG CCAGGAGAGG GATTATGCCG GGATGATATT TATCTCTCCG GCTATAGGTT TACCGCCCGT GGCAGCAGGA GCAAAGTGGC AAGCACGTTT AGGGCAGATG TTAGGGTTAG AAAAACTCAG TTGGAATAGT ATTCAAACGG AATATGATCC GTTCAAATAT AACTCTTTTG CGGTGAATGC TGGTGATGTG GTCTACCGGC TTGCCGAGCG TAATCAAGCT ATTATGGATA TGCTGTCGGC AGAGCAGTTA TTATCTATGC CACCAATATT ATCGTTTCAG TCTATTACCG ATGCTACGGT TTCGAGTTTG TCAGTTATCT CAGATCTCTA TCTGCGATTG CCCGATAATG GTCACCAATT GGTGATGTTC GATATCAATC GAACTCAAGT CAATATGGGG TTAATCCCTC ACGATCCCTT AACGCCCATC AGCGGCGTGA TAAACAAGGA AAATTTACCA TTTGATTTCA CCTTGATCGA AAATATCGAT GCTGTAAACG AAGATAGGCG ACGTGTTCAG GCGACAACTC ACTCTGCCGA TATGGGACTC AAAGTCACTT CCTTAACGCA AAGGTGGCCA AGAAATGTTT ATTCTCTCTC TCATGTTGCT CTGCCGTTTC CTATCGAAGA TAGTTTGTAC GGTCCGGAAG GAGTGCATTT TATTGAGCGG GTTCAAATCG GTGCGGCATC ATCTCGGGGG GAGAGAGGCG TTTTAAGTGT TCCAGCGGCC GAGATTTTAA GACAGAAATG GAATCCCTTC TTCCCATATA CTATCCAAAA AATGGATGAC TTCTTGTTAT CTCTGGAAAA TGAACCTTGA
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Protein sequence | MKTIVIGSTK HLILALIYAS LGITVALLAV GVWLLNSRPE LDIWHTTQLT SQYNRSLELT NFTEYQKLEK QLFEELESEI YSHTSGPHSS ILNRYVHGSL AAPEKWRNDW NRTYEWPLDD AKFGVLLLHG MSDSPYALSH VAKHFEGKAH LLGLRLPGHG TIPSGLVDLE WQDMASAVSL ATRHMRDVLK GRPLYVVGFS TGAALALNHE LERLSKSQER DYAGMIFISP AIGLPPVAAG AKWQARLGQM LGLEKLSWNS IQTEYDPFKY NSFAVNAGDV VYRLAERNQA IMDMLSAEQL LSMPPILSFQ SITDATVSSL SVISDLYLRL PDNGHQLVMF DINRTQVNMG LIPHDPLTPI SGVINKENLP FDFTLIENID AVNEDRRRVQ ATTHSADMGL KVTSLTQRWP RNVYSLSHVA LPFPIEDSLY GPEGVHFIER VQIGAASSRG ERGVLSVPAA EILRQKWNPF FPYTIQKMDD FLLSLENEP
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