Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1792 |
Symbol | |
ID | 5613047 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2160005 |
End bp | 2160859 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640932667 |
Product | phosphonate ABC transporter, periplasmic phosphonate-binding protein |
Protein accession | YP_001473531 |
Protein GI | 157374931 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component |
TIGRFAM ID | [TIGR01098] phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.446937 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGGCTTT TACAAATGGT CTGTTTAGTG CTGCTTAGCA CGCTCTCTAC CTGTGCTCTG TCTGCCGTTT TTACCTTTAC AGCCATTCCT GATGAAAATG AAAGTCAACT TAGAACGCGT TTCGAAAAAG TGGCCCTGTA TTTAGAGAAA GAGCTAGGTG TAGAAGTCAA ATATGTGCCG GTAAAGTCCT ATTCGGCAGC CGTCACCGCT TTTAGAAATA ATCAGGTACA GCTTGCCTGG TTTGGCGGCT TATCAGGGGT TCAGGCCCGT CGTTTAGTCC CCGGCTCGTC AGCGATTGCC CAGGGTAACG AAGACCAATT TTTTAAAAGT TATTTTATTG CTCATAAGTC TGCCGATCTA CTTCCATCAG ATAGTTTTCC TAATTTGAAT GGGCTCACTT TCACTTTCGG TTCGAAAAGC TCCACATCAG GACGCTTAAT GCCTCAGTTC TTTATCGAAA GAAATTTGGG CAAGAAATCT GAAGATGTGT TTACACGTAT CGGATTTTCC GGCGATCACA GTAGAACGAT CACGCAAGTT CAGGCTGGTG CTTATCAGGT CGGTGCAGTG AATTATAAGG TGTGGGAGAC GGCTGTTGAA AATGGCACGG TCGATCTTGA AAAAGTGAAT GTCATTTGGC AGAGCCCAGC CTATCCGGAT TATCAGTGGA CCGTACGAGA GGGTGTCGAT AAAAAATTCG GTGCAGGTTT TAAAGCGAAA ATTGAAGCTG CGCTTCTTGG AATGAAAGAT CCTGATTTAT TAAAAAGCTT TCCCAGGCAT TCTTTCGTTC CGGCTGAGAA CGCAGATTAT GAGCCTATTG AGAGTGTAGC GAAAGCTATC GGTCTTATCG ATTAG
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Protein sequence | MRLLQMVCLV LLSTLSTCAL SAVFTFTAIP DENESQLRTR FEKVALYLEK ELGVEVKYVP VKSYSAAVTA FRNNQVQLAW FGGLSGVQAR RLVPGSSAIA QGNEDQFFKS YFIAHKSADL LPSDSFPNLN GLTFTFGSKS STSGRLMPQF FIERNLGKKS EDVFTRIGFS GDHSRTITQV QAGAYQVGAV NYKVWETAVE NGTVDLEKVN VIWQSPAYPD YQWTVREGVD KKFGAGFKAK IEAALLGMKD PDLLKSFPRH SFVPAENADY EPIESVAKAI GLID
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