| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1751 |
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| Symbol | |
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| ID | 5610870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2103179 |
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| End bp | 2105026 |
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| Gene Length | 1848 bp |
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| Protein Length | 615 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640932621 |
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| Product | cyclic nucleotide-binding protein |
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| Protein accession | YP_001473490 |
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| Protein GI | 157374890 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0246988 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGCAA GTGAACTTCA ACCCATTACC GAGTTTATCA AGGCGCAAGT GCCTTTTGAT
ACACTGGACC TCGCGACACT CGAACGTTGC TGTAAAAGCC TGAGCGTAGG CTACTACAGT
AAATTATCTG CGTTTGTGCC CCTCGATGAG AGTCACCCTC AGCTCTATAT CGTACGCAGC
GGCGCTTTCG AGGTGAGAGA TAATGATGGC GAGTTGCTGG ACAGATTAGG CGAGGGGGAT
TACTTCGGTT TTCCCTCCCT GTTATCCGGT GAAAAGGTGA GTAACCGGGT TCGGATCCTC
GAAGATGGCC TGGTGTATCA CCTCGATCCC GACACTTTCG ATTACCTGCG TGTAGAGAGT
CGGCAATTCG ATCGTTTCTT TAACCGCGCC TTCGCTAAAC GCCTGCGTCA TCAGACCCGT
TTCAAGGCCA AAGAGCTAAC CACCACCAAT CGGGTCAGCT CATTGATGTC AGGCGACCCT
CTGGTTATCG ACGTTAATGC GACGGTGAGT GATGCCGCCC GAAAAATGCG CTCGACGCGG
GTCTCCTCGG TCTTAGTGAT AGATAATAAT AAGCTTAGTG GGATCTTAAC CGACAGAGAC
TTGAGAAACC GAGTCTTAGC CGAAGGGTTA GAGGGAAGTC TGCCCGTTCA TCAGGCCATG
ACGACAAAGC CCAAGACCCT GACATCAAAT TCGCTGGTAT TTGAAGCCAT GTTGCTGATG
AGTGAGCATA GTATTCATCA TCTGCCTATC GTTGACGATG AGCGCGCCGT GGGAGTATTG
ACCAGTACCG ACATCTTACG TGGCCAAAGC TCACAACCTC TGCTTTTGAT TGGTGAGATA
GAGCGTCAAA ATGATCTTGA AAGTTTAATC GGTGTCAGTA AGCAGATCCC GCTCTTGTTG
CAGAATCTGA TCAGTGCAGA TGCAAGGGCG GAGGAGATTG GTCGGGTACT GACCTCGGTG
ACCGATGCCT TGACCCGGCG TCTCATCGTA CTGAACCAAC AGATCCTGGG AGAAGCCCCC
ATGGCCTTCT GCTGGTTGGC ATTCGGTTCT CAGGGACGGC AAGATCAGGC GGCATGTTCG
GATCAGGACA ATGGTTTGTT GCTCGCTCAT GAACCCGATG AAGCGGCTGC CGGCTATTTT
GAAGCCTTGA CCAAGGCGGT ATGTAACGGC CTGGACAGAT GTGGTTATAT TTATTGCCCC
GGCGATATCA TGGCGCAGAA TCCTAAGTGG CGCCTGACCC TATCTCAATG GCAACAGCGC
TTCGGTAAGT GGGTGAATAC TCCGGAGCCT AAGGCGTTAA TGCATGCGAG TATCTTCTTC
GATATGCGCT CTGTCTACGG ACCGAGCTCT CTTTTCGATA GTCTGCAGGA CAAGGTGTTA
GCGGAAACGA AAGACAATGA TATCTTCCTT GCCGGAATGA CCAATAACTC ATTGCTGGAG
TCGCCGCCGT TAGGGTTTTT CAAACAGTTT GTACTCGAAC GCGACGGACG AGAGGTGAAG
GGGATCGATC TGAAACACAA GGGAAATGCC TTGATAAATG ATATCGCCCG GGTTTATGCG
CTGTCGGCCG GCATTAAAGA GGTGAATACG GCAAAACGCA TTCGTGCGTT AATGGAGAGT
AATATCATTA ATCGTAAAGA CGCACTGAAT CTCGCCGATG CCCATGAGTT TATCGCCCAT
ATGCGTCTAT CCAATCAAGG TTATCAGTAC ACTCACTCGA TAGAACTGTC TAATTACCTG
AAACCACAGA ATCTCTCCTC ACTGGTTCGT CATCAGTTAC GGGATGCATT TAAGGTGGTG
CATGATGCTC AGGCCGGGAT AAAGCTTAAA TTTACGAGGA CCTTTTAG
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| Protein sequence | MDASELQPIT EFIKAQVPFD TLDLATLERC CKSLSVGYYS KLSAFVPLDE SHPQLYIVRS
GAFEVRDNDG ELLDRLGEGD YFGFPSLLSG EKVSNRVRIL EDGLVYHLDP DTFDYLRVES
RQFDRFFNRA FAKRLRHQTR FKAKELTTTN RVSSLMSGDP LVIDVNATVS DAARKMRSTR
VSSVLVIDNN KLSGILTDRD LRNRVLAEGL EGSLPVHQAM TTKPKTLTSN SLVFEAMLLM
SEHSIHHLPI VDDERAVGVL TSTDILRGQS SQPLLLIGEI ERQNDLESLI GVSKQIPLLL
QNLISADARA EEIGRVLTSV TDALTRRLIV LNQQILGEAP MAFCWLAFGS QGRQDQAACS
DQDNGLLLAH EPDEAAAGYF EALTKAVCNG LDRCGYIYCP GDIMAQNPKW RLTLSQWQQR
FGKWVNTPEP KALMHASIFF DMRSVYGPSS LFDSLQDKVL AETKDNDIFL AGMTNNSLLE
SPPLGFFKQF VLERDGREVK GIDLKHKGNA LINDIARVYA LSAGIKEVNT AKRIRALMES
NIINRKDALN LADAHEFIAH MRLSNQGYQY THSIELSNYL KPQNLSSLVR HQLRDAFKVV
HDAQAGIKLK FTRTF
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