| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1722 |
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| Symbol | |
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| ID | 5609635 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2067922 |
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| End bp | 2069133 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932592 |
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| Product | RDD domain-containing protein |
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| Protein accession | YP_001473461 |
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| Protein GI | 157374861 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1714] Predicted membrane protein/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000166004 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTAAGA CGATTAAAGA GACAGATCCA AAAACAATGG TGACTCCCTT CGCATTTGAG
ATCGCTCCTC AGGTGCTCTA TACCCCTTTG GCCTCTCCAC TTAAACGCGG AATGGCAATG
GCCGTCGACG GACTGTTGAT CTCTGTTTTG GCTGAGCAGG CGGGTTGGGT GTTTATCCTG
CTGGTGGGGT TAACTCTACT GATACAGAGA AAAAGCCATG AGCTTGGCAA AGTGTTGAAG
TGGGGATTGT ATCTGTCGAT GTTTGTGATG ATGCTGTGGG TGACGTTTGA GAACCTGGTC
TCTACCAGTT CAGATGGACA AACTCAGGAG TCAGAAAGTT ATATAACGGC CCCCTCCGTT
GGTGAGGTAA TAGGTTATCT GCCTGAGATC ATCAGATTCA GTATGTGTGA AGAGCTGAGC
TGTGCACAAA CGGAGTTAGA CGCTTTAATT AAGGTGCTTA AACAGACTAA TCTGGCTGAA
GCGGAACAGA AGGCGATACT CATCGGCGCT ATCAAGGAGT TGGCGCTAAC CGATGATGAG
AAAGGGCAAC TGCAGCGTGA TATAAGCCAG GCCTATCCAG AACAGACTAT CGAACAAGAA
GTCGAACCCG ATGTTGAACA AGGCATTCAA CAAGAAGACG TTCAACAAAA GAGTGATATG
AGCGGGATCC ATCCGGATGA AGCTGTGAAA CCTCTCACAG ACGAGGAGCC TGTATCAATG
GAGCCTGTTG ATACAGAAGA AGCGTTAACC TACCCATTGA CCGGGATCGC GAAACAAACT
GAGGAGGGCG AGTCGCATCT TGAAAAGCTG GATGAAGATG ACGCTGAAGG AGAATACAGT
CTCATCTCTT GGGCTAAAGG CATTTTAAAT GATCTGGGTT TAGGGTTTGG GTGGGCAGCA
TTTTATTTTA CTGTGTTTAC CGCCTGGTTT GATGGGCAGA CCTTAGGCAA GAAGTTATTC
CGTATTCGGG TGATCCAACT CGATGGTACC GGGCTCTCCT TGTGGGACGC TTTCGGTCGA
TATGGTGGCT ATGGCGCAGG GTTCGCTACC GGACTGTTGG GTTTCTTGCA GATCTATTGG
GATGCCAACA GGCAGGCCAT ACAAGATAAG ATCTCAGCTA CCGTGGTGGT CGATCTTACC
AAAGAAAAGG ATGAGTCTAT GGTGACACTT TCCTATATAG AGCCATTATT TAACCAGAAA
CATACTGACT GA
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| Protein sequence | MTKTIKETDP KTMVTPFAFE IAPQVLYTPL ASPLKRGMAM AVDGLLISVL AEQAGWVFIL
LVGLTLLIQR KSHELGKVLK WGLYLSMFVM MLWVTFENLV STSSDGQTQE SESYITAPSV
GEVIGYLPEI IRFSMCEELS CAQTELDALI KVLKQTNLAE AEQKAILIGA IKELALTDDE
KGQLQRDISQ AYPEQTIEQE VEPDVEQGIQ QEDVQQKSDM SGIHPDEAVK PLTDEEPVSM
EPVDTEEALT YPLTGIAKQT EEGESHLEKL DEDDAEGEYS LISWAKGILN DLGLGFGWAA
FYFTVFTAWF DGQTLGKKLF RIRVIQLDGT GLSLWDAFGR YGGYGAGFAT GLLGFLQIYW
DANRQAIQDK ISATVVVDLT KEKDESMVTL SYIEPLFNQK HTD
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