| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1671 |
|---|
| Symbol | |
|---|
| ID | 5610166 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 2001694 |
|---|
| End bp | 2003211 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640932541 |
|---|
| Product | type II secretory pathway ATPase ExeA |
|---|
| Protein accession | YP_001473410 |
|---|
| Protein GI | 157374810 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3267] Type II secretory pathway, component ExeA (predicted ATPase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000168756 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCAAG CGTTTTACCG GCTCAATGAA AACCCATTTT CGAACGAAGT TTCTTCTAGT
AACCTGTTTC TCAGTGAGCA TCACAGAGAG GCCCTGACCT GTCTGAATTA CGGTTTAAAT
GAAACCGGCG GATTCGTGCT GTTAACCGGC GAAGAGGGTT CGGGTAAAAC GAGTGTAGTC
AAAGCGTTTC TCAAACAGGT ATCAACCACC CACGATACGG CCTTCATCAC TAACCCTTCG
ATAAGTGAAC ATGAATTATT GGCGAAGGTA TGCAATAAAC TCAATATTCC TTATGAAGGA
ACCCCCAGCC TAAAGTGCTT TACCGATCTT CTCTGTCAAT TCTTGCTCAA TAACGATGCT
CAGGGCCGTA GCACACTGGT TATCATAGAC GAAGCACAAT ACCTGAGCAG TGCAGTACTG
GAACAACTCA GACTACTGAC AAACTTAGAG ACTGACACAA AAAAGTTACT CCAGTTGATT
TTGGTTGGCA GACCCGAGTT AATTCAGATG TTGAGGCAAG AGGAGCTTAG ACAAGTCTCG
CAAAGGATCA CGGCAAGGCT TCATATCCCT TCGCTTTCCC AATCAGAAAC AAGTGCGTAT
ATACAGCATC ACCTGAGGGT GGCAGGCCAT CACGATCCGC TGTTTGCTCC CGCAGCCTTA
AAGGCTGTAC ATAGATACAG TGGAGGGCGG CCCTCTATGA TTAACCAGCT CTGTGAACAG
GCTTTGATGA TTGGCCATGC TCAATCAAAA AACACCATAG ATTCAAGCAT CATCTCTACT
GCCGTCAGTC AAATTCCGGC GATTAAAATA AAGCCACGCA ATGACCGCTC CCTTTTCGCT
ACGCTAAGCG CAATGGCGGT CGCGACTGTG GCGGTGTTAA TGATACTCAC GCTGACATTA
ACCCACAGCG TTCCAAAAAA GCCAACTGAC CGAGTCGAAC AAGAGACTAT GACAGAAACC
GCTATGATGG CAGGCCGCCT CCCCCAAGAG CAGTTGGCAT TGGATGGAGA AGAAAGCTCC
AGGCTCAAAG AACGAGACCC GATAGCAGCG CAGAACTTCC AGCTCCCCCC GAAACATTTC
AATGAAGCGC AAGGTGCTAT CAACGCCGAA CATAGTGCAG TGGATGGGCC CAGCGAGCAG
GAAAAGACGC CAATCATCGA ACAAGAAACT GAGCACGCTC TTATCGCTCA ATCATCCGAA
ATGGATGCAG ATGCTAAAGC TTCATCAAAC GTGGACCGTA ATCAATCGAC CAAGCCTCTG
GTCCGGGTTC AACCGAACTG GTATGTACTA CAGATCTATG CAGGACGTGC CCGTCCCGAT
GACATAACCA AGTTTCACTG TGAGAACATT AATTTACTTA TCAGACATCA CAATGAGACC
TATTATCTCA CCTCAGAACA CCTGACCTTA CCTCAGGCAA AACAGACGAA ACGGCTAATG
ACAGAAAAGT GCCAAATCGA TACCTGGATT AAACCCCTCC CGAAGGGCTG GCAAGCTCTG
GTGGCATCTC AGAACTAG
|
|---|
| Protein sequence | MFQAFYRLNE NPFSNEVSSS NLFLSEHHRE ALTCLNYGLN ETGGFVLLTG EEGSGKTSVV
KAFLKQVSTT HDTAFITNPS ISEHELLAKV CNKLNIPYEG TPSLKCFTDL LCQFLLNNDA
QGRSTLVIID EAQYLSSAVL EQLRLLTNLE TDTKKLLQLI LVGRPELIQM LRQEELRQVS
QRITARLHIP SLSQSETSAY IQHHLRVAGH HDPLFAPAAL KAVHRYSGGR PSMINQLCEQ
ALMIGHAQSK NTIDSSIIST AVSQIPAIKI KPRNDRSLFA TLSAMAVATV AVLMILTLTL
THSVPKKPTD RVEQETMTET AMMAGRLPQE QLALDGEESS RLKERDPIAA QNFQLPPKHF
NEAQGAINAE HSAVDGPSEQ EKTPIIEQET EHALIAQSSE MDADAKASSN VDRNQSTKPL
VRVQPNWYVL QIYAGRARPD DITKFHCENI NLLIRHHNET YYLTSEHLTL PQAKQTKRLM
TEKCQIDTWI KPLPKGWQAL VASQN
|
|---|
| |