| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1662 |
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| Symbol | |
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| ID | 5610418 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1990806 |
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| End bp | 1991477 |
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| Gene Length | 672 bp |
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| Protein Length | 223 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932532 |
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| Product | beta-lactamase domain-containing protein |
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| Protein accession | YP_001473401 |
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| Protein GI | 157374801 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.220652 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATGAATA AGTGCAGGCA TGAATCAATG AAGTATCAGA TTATTCCCGT AACTCCTTAC
CAGCAAAATT GCAGCCTGAT CTGGTGCAAT AAGACGATGA AAGCAGCGGT GATCGATCCC
GGTGGCGATC TGGAGCGAAT TCTGGCCGAA GTCAATAAGC TTGGCGTAAC AGTAGAAAAA
GTACTACTTA CCCATGGTCA TATCGATCAT GTCGGTGCGG CGAAGCGCTT AGCAGACCAC
CTTGGTATCA CGGTCTTAGG TCCGCACAGG GACGACACCT TCCTACTCGA AACACTGCCG
GATCAAAGCA GTGATTTTGG TTTTCCGGCC TGTGAAGTTC TTATACCCGG CGAGTATCTT
GAAGATGGTG CAAGCGTGAC TGTAGGCGAG CAGACATTAC AGGTCATTCA TTGCCCGGGC
CACACCCCCG GTCACGTGGT TTTCTATTCA GAAGCCGATA AGAGGGCATG GGTTGGAGAT
GTACTGTTTC ATGGTTCGGT TGGCCGAACT GATTTTCCGC GTTCCAGTCA TCAGGACCTT
ATCGATTCGA TCACTAAAAA ACTGTGGCCT TTAGGTCGTG AGGTTGAGTT TGTGCCGGGT
CATGGTCCAA TCTCTACCTT TGGCAATGAA AGGGATCAAA ACCCCTTCGT TGCTGATCAG
CTTTTTTATT AA
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| Protein sequence | MMNKCRHESM KYQIIPVTPY QQNCSLIWCN KTMKAAVIDP GGDLERILAE VNKLGVTVEK
VLLTHGHIDH VGAAKRLADH LGITVLGPHR DDTFLLETLP DQSSDFGFPA CEVLIPGEYL
EDGASVTVGE QTLQVIHCPG HTPGHVVFYS EADKRAWVGD VLFHGSVGRT DFPRSSHQDL
IDSITKKLWP LGREVEFVPG HGPISTFGNE RDQNPFVADQ LFY
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