Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1605 |
Symbol | |
ID | 5611660 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1915261 |
End bp | 1916148 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640932475 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001473344 |
Protein GI | 157374744 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.25782 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCATGA TCACCAGACT GCATTACTTT AATTGTGTCG TAGAAACAGG AAGTATCTCT GAGGCGAGCC GGGTGTTCGA TGTTCAGCCC TCATCGATAT CCCGTCAACT TATCGCATTA GAGAAAGAGT TGGGAATAAG CCTGATCAAC CGCACGACCC GTAATATAGG CCTCACTGAA GCTGGGCTCA CCTATTACCA ATATTCTCAA CGAATCGTCT CCGAGCTTGA CGAAGCCCAC AGAGCGGTCA ACGATCTACA GCAAAATCCA AAAGGGTCTC TGAAGGTCAG TATGACTGTC GGCTTCGGCG AAAGCTGCGT GCTTCCCTTG GTCCCCGTCT TTATTAGCCT GTTTCCTGAC ATTAAAATAG AGCTCGAGCT AACCGAACGG GTCATAGATC TGGTTGAAGA CAATGTGGAT ATTGCTATTC GAAGTGGCCG CTTGCCGGAC TCAAATCTCA TCGCCAGAAA ACTTGCCGAC AACAATTTTC TACTTTGCTC CAGTCCCCAG TACCTGGCCC AACACGGCAG CCCTGAAACC CCTCAGGCAT TAACGGATTT TGATTGTATT CGATACGGAT ACGCGGGATG GCGAGACTGG TACCTGATGG ATGAGAAACC TAAGAAGTTA TCGATTAGAG ATGGGATCAC GGTAAATTCA GTCAATGGCC AGAAACAGTT ATTGCTGAGT CATGCAGGCC TGGCCCTGAT GCCATTATGG GCGGTCCGCG ATGAGCTTAA AAATGGCAGT CTGACTCATG TTCTCAACCA GCATACATTC AGTCCTTATG AAAGCATGAG CTCAACCTAT GCCATCTATT TAAGAAGAGA GCTTATCTCT CCAAAAATCA GGGTGTTCCT GGATTACCTG AAAGAACATT TAGATTAA
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Protein sequence | MSMITRLHYF NCVVETGSIS EASRVFDVQP SSISRQLIAL EKELGISLIN RTTRNIGLTE AGLTYYQYSQ RIVSELDEAH RAVNDLQQNP KGSLKVSMTV GFGESCVLPL VPVFISLFPD IKIELELTER VIDLVEDNVD IAIRSGRLPD SNLIARKLAD NNFLLCSSPQ YLAQHGSPET PQALTDFDCI RYGYAGWRDW YLMDEKPKKL SIRDGITVNS VNGQKQLLLS HAGLALMPLW AVRDELKNGS LTHVLNQHTF SPYESMSSTY AIYLRRELIS PKIRVFLDYL KEHLD
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