Gene Ssed_1603 details

Gene Information

• Locus tag: Ssed_1603
• Symbol: ribA
• ID: 5611770
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella sediminis HAW-EB3
• Kingdom: Bacteria
• Replicon accession: NC_009831
• Strand: +
• Start bp: 1913730
• End bp: 1914347
• Gene Length: 618 bp
• Protein Length: 205 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 640932473
• Product: GTP cyclohydrolase II
• Protein accession: YP_001473342
• Protein GI: 157374742
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0807] GTP cyclohydrolase II
• TIGRFAM ID: [TIGR00505] GTP cyclohydrolase II

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 0.851848
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCGATTA AGTATGTCGC TTCTTCAAAG CTGCCCACAC CATGGGGCGT ATTTACCATG 
CATGGTTTCG AAGATTCCGA TACAGGAAAA GAGCATGTGG CGCTGACGCT AGGTACGCTG 
GATGCAAATA CCCCGATTTT AGGTCGCATT CACTCCGAGT GTTTAACCGG TGATGCCCTG 
TTTAGTTTAC GTTGTGATTG TGGATTCCAG CTTCAAACCG CAATGCAGAA TATTGCCGAA 
GCAGGCCAAG GTTTTATCCT TTATCTTCGT CAGGAAGGGC GTGGAATTGG TCTGCTGAAT 
AAGATCCGTG CCTATGAGCT ACAAGATCAA GGTGCCAATA CCGTCGAGGC TAATGAAAGA 
TTAGGTTTCC CGGCCGATAT GCGAAAATAC GATATGATCT TACCTATGAT GGAGAAGATC 
GGTATTAAGC AAGTGAAGCT GATGACCAAT AATCCTCGCA AAGTTAAGGC GATGAAAGAG 
TTGGGTATCG AGGTCGTTGA GCGAATACCA CTTCAGGTGG GGAAAAACCG CTATAACGAA 
GGGTATCTGA AGACTAAGTC TACTGAGCTT GGACATATGA TGTCCGAATA TCATTTTACC 
GGTGAAGAGA AAGAGTAA 

 

Protein sequence

MSIKYVASSK LPTPWGVFTM HGFEDSDTGK EHVALTLGTL DANTPILGRI HSECLTGDAL 
FSLRCDCGFQ LQTAMQNIAE AGQGFILYLR QEGRGIGLLN KIRAYELQDQ GANTVEANER 
LGFPADMRKY DMILPMMEKI GIKQVKLMTN NPRKVKAMKE LGIEVVERIP LQVGKNRYNE 
GYLKTKSTEL GHMMSEYHFT GEEKE