Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1578 |
Symbol | |
ID | 5612465 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1883416 |
End bp | 1885266 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640932448 |
Product | hypothetical protein |
Protein accession | YP_001473317 |
Protein GI | 157374717 |
COG category | [S] Function unknown |
COG ID | [COG4805] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.222544 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.140348 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAGAG CTTTAATTGC GGTATCAATA GGATTGGTAC TAGGCCTAAC AGCTTGTTCA GATAGTGAAA AAGCAACTGG GGTATCTGTT AATGCACAAG CGGAAATAGC ACAAAACAGC CCAGTTAAAC AAGGTCAAGC TATTAAGAAT GAAGCTGTAG AGCAGGCTTA TTTAACCCTC GTGGATAACT TCTTTAAAGA CTACCTTAAA CTTGAGCCTA TCTATGCGAC GTTTGTCGGT GTTAACGATT ACAATGACCA GTTCGGTGGT GATCTGACCG ATGAGTACCT TAAAGCTCGC CACGAGTTTA ATACCAGTTA CCTGAAACGT GTCGAACAGA TTGATAGAAG CCAGCTCTCT CAAGATCTAC AGTTAAGCTA CGACATGTTT AGTTATGATC GAAATGTTGC CTTAGTCGAT GAGACATTCC CGTCACGCTT TATGCCTATG AATCAGTTCT ACAGTACAGT GATAAGCATG GTGCAACTTG GCAGTGGTGA AAGTGCTCAG CCTTTCAACA CAGTGGAAGA TTACGATAAC TGGGCTTCAC GTCTCTCTGG TTTTATCAAC TGGACTAAGC TCGCACAAGC GCGAATGGAT GAGGGGATAA GAAGTAAAGT TGTCCTGCCT CGTATCCTGG TTGAACGCAT TATTCCTCAG CTCGAAGCAC AGTTGGTAAA CCAAGCCAGT GATAGTTTGT TTTACACTCC GGTGAACAAT TTTCCGGAAA GTTTTACCCA AGCACAAAAA GATGAGATCA CAGTAAAGTA CACCCAATTG ATAAATAAAG AGCTACTGCC GGCATTAACC TCATTGAAAG AATACTTCGC CATAACCTAC TTGCCGGTTG CTCGAGCCAG CGATGGATGG TGGGGGTTGC CCAATGGTAA AGTTTGGTAT CAGCACTTAG CTAACTCTCA CACGACGACC ACTATGTCAG TCGATGAGAT CCATCAAATT GGTTTAAGTG AAGTCTCCCG TATTCTGTCT GAAATGGACA AAATTCGTCA GCAGGTAAAG TTTGAAGGCG ATTTAACGGC ATTTTTTGCT TCATTGTCAT CTGAACCAAA GTATTTCTTC AGTGAACGTC AGGGCTTGAT AGATGGCTAT ATGACACTTA AAGATAAGAT TAATGCTGAA TTGCCTAAAT ACTTTAACGT TATGCCTGAG GCGGATTATG TCGTTAAACC TGTAGAGAGC TTCAGGGAGC AATCCGCGGC GGGGGCCTCA TATGAATCGC CAGCGGTCGA TGGCTCACGT CCGGGTGTGT TTTATATTAA TACGTACAAC CTAAAGGCAC AGCCTAAATG GGGGATGACG ACGCTTTCTC TGCATGAGGC GGCACCAGGA CATCATTTCC AAATTGCCAT TAAGCAAGAG CTTTCGGGGG TACCTGAGTT TCAACGATTC AGTGGCTATA CCGCTTTCGA AGAGGGCTGG GCGCTTTATG CTGAATACTT AGGTATTGAG ATGGGGTTAT TTGAAGACCC TTATCAATAC TTTGGTAAGT TATCCGATGA GATGCTTCGT GCCATGCGTC TGGTTGTCGA TACGGGACTC CACGCTAAAG GCTGGACACG TGAGCAAGCC ATTCAGTATA TGAAAGACAA TTCGCCAATG GCTGAGTCGG ACATCATTGC TGAAGTCGAG CGTTATATGG CCATTCCCGG TCAAGCCTTG TCGTACAAAG TCGGTCAGTT AAAGATCTTG TCGTTGAGAG CCGAAGCAGA GGAAGCCTTG GGGGATAAGT TTGACTTAAA GTCGTTCCAT GACCAAGTAT TGACTTCTGG TTCCCTGCCT ATGGCCGTGA TGGAGATGAA GATCCATCAT TGGATTGAAA GTCAGAAATA A
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Protein sequence | MKRALIAVSI GLVLGLTACS DSEKATGVSV NAQAEIAQNS PVKQGQAIKN EAVEQAYLTL VDNFFKDYLK LEPIYATFVG VNDYNDQFGG DLTDEYLKAR HEFNTSYLKR VEQIDRSQLS QDLQLSYDMF SYDRNVALVD ETFPSRFMPM NQFYSTVISM VQLGSGESAQ PFNTVEDYDN WASRLSGFIN WTKLAQARMD EGIRSKVVLP RILVERIIPQ LEAQLVNQAS DSLFYTPVNN FPESFTQAQK DEITVKYTQL INKELLPALT SLKEYFAITY LPVARASDGW WGLPNGKVWY QHLANSHTTT TMSVDEIHQI GLSEVSRILS EMDKIRQQVK FEGDLTAFFA SLSSEPKYFF SERQGLIDGY MTLKDKINAE LPKYFNVMPE ADYVVKPVES FREQSAAGAS YESPAVDGSR PGVFYINTYN LKAQPKWGMT TLSLHEAAPG HHFQIAIKQE LSGVPEFQRF SGYTAFEEGW ALYAEYLGIE MGLFEDPYQY FGKLSDEMLR AMRLVVDTGL HAKGWTREQA IQYMKDNSPM AESDIIAEVE RYMAIPGQAL SYKVGQLKIL SLRAEAEEAL GDKFDLKSFH DQVLTSGSLP MAVMEMKIHH WIESQK
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