Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1551 |
Symbol | |
ID | 5613827 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1851744 |
End bp | 1852775 |
Gene Length | 1032 bp |
Protein Length | 343 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640932420 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001473290 |
Protein GI | 157374690 |
COG category | [V] Defense mechanisms |
COG ID | [COG4168] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000405821 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCACGAT ACCTTCTTCG CAGGCTGAAC CTTTTTCTTG CAACCTCTTT TGTACTGTTT ATCGTGCTGT TCATTGTAAC CAGCCACTTT CCGGTTGAAA AAAGTTTTGC GCTAACCGGA TTACACTCAC CCAATGCACA GCAAATAGAA CAGATAGAGA AGAATTACAG CCTAAATGAT GGACAATTCA GTCAATTTTT CTCCTATCTG CAGCAAAGAT TAAGTGGGGA TTTAGGTATC TCAGCCACCT CTCAACGACC CGTTATCGAA GAACTGGCAT CGGTACTTCC GGCATCATTT GAACTGGCGG CCGTTTCAGC CATGCTGGCA TTAACATTGG GGATCCCGCT CGGGGTGCTT GCCTCCTTGA GCAGACATAA AATTACACAA CACACGATTA TGGCAATAAC CTTAACCGGA TACTCAATTC CGGTATTTTG GTTGGGCCTG ACTCTCTCTC TGTGGTTTGG CGTTCAGCTC GGCTGGCTGC CGATTTCAGG CCAGTTAAAC CTGCTCTATG AGATAGAACC AGTCACCGGA TTTGTATTGA TAGACACCCT GTTATCAGAT TCGCCGTACA GTACCTCGGC ATTTATAGAT GCCTTACTGC ATATCATCCT ACCGGCTATC ACGCTGGCAG TTTTGCCCTT CACTGTTGTG GTCAGAATTA CCCGAGCGGC AATCATCACG ATTATGGATC AAACCTATAT TAAGGCTGCA GAGGCCCGAG GGCTTCATAC CTCACGGGTA GTATTACGTC ATGCATTACC TAATGCCCTA ATTCCGGTCT TAAAAAATCT GGGATTAATG TTAGGCCCAT TCGCCAGTTA CGCCATGGTA GTAGAGGTTA TTTTCGCCTG GCCCGGTGTC GGTGCCTGGC TCGTATCGGG AATATATCAA CGCGATTACA CCGTTATTCA GGGTGGGGTC TTGGCTGTCG CATTGATCAT CATCTTTATC AGTATCATGA TTGAAGTACT TTATACGGCC ATCAACCCTC TCAGCAGGAA AGAACTTTAT GCCTCAAATT AA
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Protein sequence | MARYLLRRLN LFLATSFVLF IVLFIVTSHF PVEKSFALTG LHSPNAQQIE QIEKNYSLND GQFSQFFSYL QQRLSGDLGI SATSQRPVIE ELASVLPASF ELAAVSAMLA LTLGIPLGVL ASLSRHKITQ HTIMAITLTG YSIPVFWLGL TLSLWFGVQL GWLPISGQLN LLYEIEPVTG FVLIDTLLSD SPYSTSAFID ALLHIILPAI TLAVLPFTVV VRITRAAIIT IMDQTYIKAA EARGLHTSRV VLRHALPNAL IPVLKNLGLM LGPFASYAMV VEVIFAWPGV GAWLVSGIYQ RDYTVIQGGV LAVALIIIFI SIMIEVLYTA INPLSRKELY ASN
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