Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1547 |
Symbol | |
ID | 5614156 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1847748 |
End bp | 1848950 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640932416 |
Product | trans-2-enoyl-CoA reductase |
Protein accession | YP_001473286 |
Protein GI | 157374686 |
COG category | [S] Function unknown |
COG ID | [COG3007] Uncharacterized paraquat-inducible protein B |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.258861 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.00115919 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATAATCA AACCTAAAAC ACGTGGCTTT ATCTGTACCA CCACTCACCC TGTTGGTTGT GAAGCTAATG TACTCGAGCA GATCAATACC ACTAAAGCTA AAGGTGTACT CACTAATGGC CCAAAAAAAG TATTAGTCAT CGGTTCTTCT AGTGGATATG GTCTATCTTC ACGTATCGCT GCCGCATTTG GTAGTGGCGC TGCAACTCTG GGTGTTTTTT TTGAAAAGCC GGGAACAGAG AGAAAACCTG GTACAGCCGG TTGGTACAAC TCGGCCGCAT TCGATAAATT TGCTAAAGCC GAAGGTCTAT ACTCTAAGAG TATCAATGGC GATGCATTCA GCCACGAAGC CAAACAAAAG GCGATCGATA TAATCAAAGC CGATTTAGGC CAGATTGATA TGGTTGTATA TTCTCTCGCC TCTCCGGTTC GAAAGTTACC CGACTCAGGG GAGCTTATTC GCTCATCACT TAAGCCTATT GGTGAAACTT ATACGGCAAC GGCTGTTGAT ACCAATAAAG ACTTAATCAT TGCAACAAGC GTAGAACCTG CAACGGAACA AGAGATCCAA GATACAGTAA CCGTCATGGG CGGTGAAGAT TGGGAACTTT GGCTAGCGGC CCTTTCAGAT GCAGGCGTAC TCGCCGATGG CTGTAAGACT GTTGCTTACA GCTATATCGG AACCGAGCTG ACTTGGCCTA TCTACTGGAA TGGTGCACTA GGCAAAGCCA AGATGGACTT AGACCGTGCA GCTAAAGCTT TGGATGAGAA ACTATCAACA AAAGGTGGTA GCGCCAATGT CGCCGTACTT AAGAGTGTAG TGACCCAAGC CAGCTCAGCC ATTCCGGTGA TGCCTCTGTA TATTGCCATG GTCTTTAAAA AGATGCGTGA AGAGGGCTTA CACGAAGGTT GTATGGAACA GATCAACCGC ATGTTTGCAG AACGCTTATA CCGTGAAGAC GGTCAAGCAC CTCAAGTCGA TGACACCAAC CGCCTTCGCC TGGATGATTG GGAATTGCGT GAAGAGATCC AGCAGCATTG CCGTGACCTC TGGCCATCGG TAACAACCGA AAACCTGAGC GAGCTGACCG ATTATCGCGA ATATAAAGAA GAGTTCTTGA AGCTGTTTGG TTTCGGAGTC GAAAATGTTA ACTACGAAGC CGATGTTAAC CCTGAGGTTA ATTTCGATGT AGAGCAGTTT TAA
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Protein sequence | MIIKPKTRGF ICTTTHPVGC EANVLEQINT TKAKGVLTNG PKKVLVIGSS SGYGLSSRIA AAFGSGAATL GVFFEKPGTE RKPGTAGWYN SAAFDKFAKA EGLYSKSING DAFSHEAKQK AIDIIKADLG QIDMVVYSLA SPVRKLPDSG ELIRSSLKPI GETYTATAVD TNKDLIIATS VEPATEQEIQ DTVTVMGGED WELWLAALSD AGVLADGCKT VAYSYIGTEL TWPIYWNGAL GKAKMDLDRA AKALDEKLST KGGSANVAVL KSVVTQASSA IPVMPLYIAM VFKKMREEGL HEGCMEQINR MFAERLYRED GQAPQVDDTN RLRLDDWELR EEIQQHCRDL WPSVTTENLS ELTDYREYKE EFLKLFGFGV ENVNYEADVN PEVNFDVEQF
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