| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1543 |
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| Symbol | |
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| ID | 5613685 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1842153 |
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| End bp | 1844498 |
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| Gene Length | 2346 bp |
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| Protein Length | 781 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932412 |
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| Product | endopeptidase La |
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| Protein accession | YP_001473282 |
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| Protein GI | 157374682 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0466] ATP-dependent Lon protease, bacterial type |
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| TIGRFAM ID | [TIGR00763] ATP-dependent protease La |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000152333 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000667603 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACACAAG AGCGTGAAGC GCGAATCGAA CTACCCGTAC TGCCACTGAG AGATGTGGTG
GTTTATCCTC ATATGGTAAT TCCGTTATTC GTCGGACGGG AAAAATCGAT CCGTTGTCTG
GAAACGGCAA TGGAGCAAGA CAAGCAGATT ATTTTAGTTG CTCAGCGTGA TGCTGAACTT
GATGACCCGA GCAGTGATGA CATTTTTGAG GTCGGCACCG TCGCCTCAAT TTTACAGTTA
TTAAAATTAC CCGATGGTAC TGTCAAGGTT TTAGTCGAAG GGGGTCAACG TGCCCGCATC
GAGAAGTATA CGAGTGAATC ATCTTTCTTC GTTGCGACGG CACAATATCT CGAATCTGAG
CCGATGGCCG AAAAAGAGGA AGAGGTTCTT GTTCGCTCGG CTGTCGGACA ATTTGAAGGT
TACATCAAGC TCAATAAGAA GATCCCACCT GAAGTATTAA CTTCCTTGTC GGGCATCGAC
GAGGCTCCTC GATTAGCCGA TACCATGGCT GCTCATATGC CGCTGAAACT CGAAGATAAG
CAATCTGTCC TTGAGATGGT AGATGTCGCA GAGCGACTCG AATATCTGAT GGCGATGATG
GAATCAGAAA TCGATATTCT TCAGGTTGAA AAGCGCATTC GTTCTCGCGT TAAGAAGCAG
ATGGAGAAGA GCCAGCGAGA GTATTATCTG AATGAGCAGA TGAAGGCGAT TCAGAAAGAG
CTGGGGGATA TCGATGAGTC TCATGATGAA TTTGAAAGCT TAGCTAAGAA GATTGAAGAA
GCTAAGATGC CCGAAGAGGC TAAAGATAAA GCCACTGCTG AGCTGAACAA ATTAAAGATG
ATGTCACCTA TGTCGGCAGA GGCTACTGTT GTTCGTAGCT ATGTGGACTG GATGATCTCT
GTACCTTGGT ATCAACGTTC TAAAATCAAA CGAGACTTAG CTAAGGCGCA AGATGTACTC
GATACGGATC ACTTTGGTCT TGAGAAGGTT AAAGAGCGCA TCCTGGAGTA TCTGGCGGTT
CAGAGTCGTG TTAAGCAACT CAAAGGCCCG ATTCTCTGCT TAGTTGGACC ACCGGGTGTG
GGTAAAACCT CATTAGGTCA GTCTATTGCT AAAGCTACTG GGCGTAAGTA TGTCCGTGTT
GCCTTAGGTG GTGTGCGTGA TGAAGCGGAG ATCCGCGGTC ATAGACGTAC CTACATCGGT
TCAATGCCGG GTAAAGTTAT CCAGAAGATG TCGAAAGTTG GGGTGAAAAA TCCACTATTT
TTGCTCGATG AGATAGACAA GATGAGCTCG GACATGCGTG GCGATCCGGC ATCGGCTCTT
TTAGAAGTTC TTGATCCGGA ACAGAACTCA AGTTTCAGCG ATCATTACTT AGAGGTTGAT
TACGATCTGT CTGATGTGAT GTTTGTGGCA ACATCTAACT CGATGAACAT TCCTGGGCCG
CTACTGGACC GTATGGAAGT GATCCGTCTT TCTGGTTACA CAGAAGATGA GAAGTTAAAT
ATTGCTAAGC AGCATCTGCT ACAGAAACAG ATTGAACGTA ATGGGCTTAA GCCAAAAGAG
GTCACTGTTC ACGATAGTGC CATTATCGGT ATTATTCGTT ATTACACCCG TGAAGCGGGC
GTGCGTGCTC TTGAGCGTGA ACTTTCGAAG ATCTGTCGTA AAGTGGTTAA GCAGATCTTG
CTTGATAAGA GTGTGAAGCA TGTTGAAGTG ACACAAGATA ATCTTAAGTC ATTCCTGGGT
GTTCAGCGTT GTGACTACGG TAAAGCAGAG TCGAATAACC AGATCGGCCA GGTGACCGGT
CTTGCCTGGA CGGAAGTTGG CGGCGATCTT TTGACTATCG AGGCAACTTC TGTCCCGGGG
AAAGGTAAAT TAACTTATAC CGGTTCGCTT GGCGATGTGA TGCAGGAGTC AATTAAAGCT
GCAATGACGG TTGTTCGTGC TCGTGCTGAG CAGTTAGGTA TTAACCCTGA TTTCTACGAG
AAACGTGATA TTCACGTGCA TGTACCTGAA GGCGCAACAC CGAAGGATGG TCCATCTGCA
GGTGCAGCCA TGTGCACGGC GTTAGTATCT AGCTTAACAG GCAATCCTGT ACGCGCCGAT
GTGGCAATGA CAGGTGAAAT TACCTTGCGA GGCGAGGTAC TGCCTATTGG TGGTCTTAAG
GAAAAACTCT TAGCCGCGCA TCGTGGTGGA ACTAAAGTTG TGTTGATTCC AAAGGAAAAT
GAGAGAGATT TGGAAGAGAT CCCGGCAAAT GTTGTTGCCG ACCTGAAGAT TTATCCTGTT
CGCTGGGTGG ACGAAGTGCT TAAATTGGCG CTAGAACGAC CAGTTGAAGG CTTCGAAGTC
GTCTAA
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| Protein sequence | MTQEREARIE LPVLPLRDVV VYPHMVIPLF VGREKSIRCL ETAMEQDKQI ILVAQRDAEL
DDPSSDDIFE VGTVASILQL LKLPDGTVKV LVEGGQRARI EKYTSESSFF VATAQYLESE
PMAEKEEEVL VRSAVGQFEG YIKLNKKIPP EVLTSLSGID EAPRLADTMA AHMPLKLEDK
QSVLEMVDVA ERLEYLMAMM ESEIDILQVE KRIRSRVKKQ MEKSQREYYL NEQMKAIQKE
LGDIDESHDE FESLAKKIEE AKMPEEAKDK ATAELNKLKM MSPMSAEATV VRSYVDWMIS
VPWYQRSKIK RDLAKAQDVL DTDHFGLEKV KERILEYLAV QSRVKQLKGP ILCLVGPPGV
GKTSLGQSIA KATGRKYVRV ALGGVRDEAE IRGHRRTYIG SMPGKVIQKM SKVGVKNPLF
LLDEIDKMSS DMRGDPASAL LEVLDPEQNS SFSDHYLEVD YDLSDVMFVA TSNSMNIPGP
LLDRMEVIRL SGYTEDEKLN IAKQHLLQKQ IERNGLKPKE VTVHDSAIIG IIRYYTREAG
VRALERELSK ICRKVVKQIL LDKSVKHVEV TQDNLKSFLG VQRCDYGKAE SNNQIGQVTG
LAWTEVGGDL LTIEATSVPG KGKLTYTGSL GDVMQESIKA AMTVVRARAE QLGINPDFYE
KRDIHVHVPE GATPKDGPSA GAAMCTALVS SLTGNPVRAD VAMTGEITLR GEVLPIGGLK
EKLLAAHRGG TKVVLIPKEN ERDLEEIPAN VVADLKIYPV RWVDEVLKLA LERPVEGFEV
V
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