Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1542 |
Symbol | clpX |
ID | 5613684 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1840725 |
End bp | 1842002 |
Gene Length | 1278 bp |
Protein Length | 425 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640932411 |
Product | ATP-dependent protease ATP-binding subunit ClpX |
Protein accession | YP_001473281 |
Protein GI | 157374681 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000361141 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000447047 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGGCGACA ACAAAAGCAA CGGTGATAGC GGGAAACTGC TGTACTGCTC TTTTTGTGGA AAGAGTCAAC ATGAGGTTCG TAAACTCATC GCTGGCCCTT CAGTATATGT TTGTGATGAG TGCGTTGAGC TCTGCAACGA TATTATCAGG GAAGAGATCA AAGAGATTTC ACCGAAACAA GATCAAGACA AGTTACCGAC TCCAAGAGAG CTGAGAGCGC ATTTGGATGA TTATGTCATT GGACAGGATA AGGCTAAGAA AGTCCTTTCT GTGGCCGTAT ATAATCACTA CAAACGCTTA AAGAATGCCG GTCCTAAAGA TGGCGTAGAG CTGGGCAAGA GTAACATCTT GCTTATTGGT CCAACGGGTA GTGGTAAAAC ATTGCTTGCC GAGACCTTAG CTCGTTTCTT GAATGTTCCT TTCACTATGG CCGATGCCAC GACACTAACT GAAGCCGGTT ATGTTGGTGA AGATGTCGAG AATATCATTC AGAAGCTGCT GCAGAAGTGT GACTATGATG TAGAAAAAGC ACAACGCGGT ATCGTTTATA TCGATGAAAT TGACAAAATC AGCCGTAAAT CTGATAACCC GTCGATTACT CGTGACGTTT CCGGTGAGGG TGTGCAGCAG GCACTACTTA AGCTGATCGA AGGCACGGTT GCTGCGGTTC CACCACAAGG TGGCCGTAAA CACCCTCAGC AAGAGTTCTT GCAAGTTGAT ACATCTAAGA TTCTATTCGT CTGTGGTGGT GCATTCTCAG GTCTTGAGAA GGTCATTGAG CAACGTTCTC ATACCGGAAC CGGAATTGGT TTTGGTGCCG AGGTCAAAGG CGAAGATGAC AAGGCGTCAA TCTCAGATAT CTTGATGCAG GTTGAACCTG AAGATTTGGT TAAATACGGT CTGATCCCAG AGTTTATCGG TCGTTTACCT GTCTTAGCGA CTTTGGCAGA ACTTGATGAT GCTGCACTTA TCCAAATTCT ATCAGAACCT AAAAATGCGA TAACAAAGCA GTTTGCTGCC TTGTTTGACA TGGAAGGTGT TGAGTTAGAG TTTAGAGAAG ATGCGCTCAA AGCGATTGCA CTGAAAGCAC AGACTCGTAA AACGGGTGCT CGTGGTCTAC GTTCAATTGT TGAAGGCATT TTGCTTGATA TCATGTATGA CCTACCATCG ACTGAAAATG TGGCCAAGGT GGTCATCGAT GAATCAGTGG TAAAAGGGGA GTCAACTCCT ATACTCATCT ATGAAAATAG CGAGTCTCAA GCAGCCGGCG CTGAGTAA
|
Protein sequence | MGDNKSNGDS GKLLYCSFCG KSQHEVRKLI AGPSVYVCDE CVELCNDIIR EEIKEISPKQ DQDKLPTPRE LRAHLDDYVI GQDKAKKVLS VAVYNHYKRL KNAGPKDGVE LGKSNILLIG PTGSGKTLLA ETLARFLNVP FTMADATTLT EAGYVGEDVE NIIQKLLQKC DYDVEKAQRG IVYIDEIDKI SRKSDNPSIT RDVSGEGVQQ ALLKLIEGTV AAVPPQGGRK HPQQEFLQVD TSKILFVCGG AFSGLEKVIE QRSHTGTGIG FGAEVKGEDD KASISDILMQ VEPEDLVKYG LIPEFIGRLP VLATLAELDD AALIQILSEP KNAITKQFAA LFDMEGVELE FREDALKAIA LKAQTRKTGA RGLRSIVEGI LLDIMYDLPS TENVAKVVID ESVVKGESTP ILIYENSESQ AAGAE
|
| |