| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1541 |
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| Symbol | clpP |
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| ID | 5613683 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1840030 |
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| End bp | 1840641 |
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| Gene Length | 612 bp |
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| Protein Length | 203 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932410 |
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| Product | ATP-dependent Clp protease proteolytic subunit |
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| Protein accession | YP_001473280 |
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| Protein GI | 157374680 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
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| TIGRFAM ID | [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000787006 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000267042 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGCAAAATG CACCAGAATC AGTACTCAAT GCACTTGTTC CTATGGTGGT TGAACAAACC
GCGAAAGGTG AACGTTCATA CGATATCTAT TCTCGTTTGT TAAAAGAGCG TGTAATATTT
TTGGTTGGGC AAGTTGAAGA GCACATGGCT AACCTTATCG TTGCACAGTT ACTGTTTTTG
GAATCAGAGA GCCCTGATAA GGATATCTAC CTCTATATCA ACTCTCCGGG TGGTTCTGTT
ACCGCTGGTA TGGCTATTTA CGATACAATG CAGTTTATTA AGCCGAACGT GAGTACGGTT
TGTATCGGTC AAGCTGCCAG CATGGGTGCT TTTTTACTCG CCGGTGGCGC CGAAGGTAAA
CGTCATTGTC TACCAAATTC AAGGGTGATG ATTCATCAGC CATTGGGTGG TTTCCAGGGT
CAGGCATCTG ACATTGCGAT CCATGCCCAA GAGATCTTAG GTATCAAGAA TAAATTAAAC
CAGATGCTAG CCGATCACAC GGGCCAGCCG ATGGAAATTA TTGAACGCGA TACCGATAGA
GATAACTTTA TGAGCGCAGC CGAAGCGGCT GAGTATGGAC TTGTTGACTC AGTGTTGAGT
AAACGAGGCT GA
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| Protein sequence | MQNAPESVLN ALVPMVVEQT AKGERSYDIY SRLLKERVIF LVGQVEEHMA NLIVAQLLFL
ESESPDKDIY LYINSPGGSV TAGMAIYDTM QFIKPNVSTV CIGQAASMGA FLLAGGAEGK
RHCLPNSRVM IHQPLGGFQG QASDIAIHAQ EILGIKNKLN QMLADHTGQP MEIIERDTDR
DNFMSAAEAA EYGLVDSVLS KRG
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