| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1527 |
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| Symbol | |
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| ID | 5613220 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1819448 |
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| End bp | 1821616 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640932393 |
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| Product | decaheme cytochrome c |
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| Protein accession | YP_001473266 |
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| Protein GI | 157374666 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACGCA AAATTATGGA TATAAAAAGA AAAAGTTCGA CGCTTAATCT GATTGCGCTG
ACTTGCTCTG CCCTGCTGTT TGGTTGTGGA AGCGACGGTA AAGACGGGGA AGATGGAAAA
GATGGCGTGG TCGGTGTCAA TATCGATTCC ACGGCGACAC TGTCCGCCAA TATCTCTACA
GCATCGGTCA CCGATGGCCT GATCACCATT AATTTTGATC TGACGAATGC CAATGGCGTC
GCGGTACTGG GGTTGACCAA AGACCATGAC CTGCGTTTTG GTATTGCTCA GCTCACCCGA
GTCAGTGAAA CCATGGGCGA TACCGAAGTA GACAGAGGGT TTAACTGGCA GGCCTATATC
AATGCCGAGA AGACCCCCAA CCCGGATTGG ATCCCCGAAG GTGAATCGCA TATCAATCCT
TCGAACCAAT ATCAGGCCAA TGTTGAAAAA GCCGCCGATT GTGATGAGTG TTTCCTCGAT
AACGGCGATG GCAGTTATGC CTATACTTAT CAGGTTAATA TTGCAGAGGT GACCGAGCCT
TTAACCGTTA CTTACAGCGC CGACTCAACC CAAAGAGCGA CCCTCGAACT TGAACTTCCT
CAGGTAACGG CCAATGCCTT CCTGGATTGG CAGCCCTCGT CAGAGTCCAG CGAAGGCATT
CAAACCCGGG ATGTCGTCTC CATTGAAACC TGCTATACCT GTCATCAAGT CGAGAGCCTT
GCACTTCATG GTGGACGAAG AATCGCAATT GAAAACTGCG CATCTTGTCA TACCTCGACC
TCCGGCGATC CTGAAAGCGG AAACAGTGTC GAATTTACCT ATATGATCCA TGCGATTCAT
AAAGGAAATG AGAGGATGAC CAGCACAGCC GATGGCATGG TTCCTGCCCC CTATAAGATC
ATAGGTTATG GCGGCGGAAT ACATGATTAT GGCAAGGTGA TGTTCCCACA AGGCCCCGCC
GCCGATTGCA GCTCTTGTCA CGTGGAGGGA GAAGGCGCAC CAGCCGATGC AGATCTGTTT
AAGGCCGATC TCAGCAATAC CGCTTGCGTG GGTTGTCACA CCGAAAAACC ATCGCAAAAT
CATAGTAGTA CCAACTGTAT AGGTTGTCAC AACTCGACCG ATACTTACCC CGGAACCGGC
AGTGCAGAGA AACGTCACTT TGATGTAATG AAGGCCTATA GCGATGCCAG GGCGATGAGC
GTTGAGTTCA GTAATATCGG TTTAACAGCC GATGGGAAAA TCAAATTTGA TCTGCAAATT
ATCGATGCTG CTGGAACAGC TATTGCGGGC GAATTTATTA ACCAAGGGAC TCGAGTCGTC
GTCGCATGGG ACAGTGACAA AGACTATCCG GCATACAATG ATGCATCCTA CAGCAATCGC
CGCATCAAAC TCAGCGAAGG CACATATGAT GCGAACTCAA AGACCTTCAC CATCACAGGC
AATAACTTCG ATATGCCGAA TGATGCCGAT GGCAAAACCT TCGAGCTCTG GTCTGCCGTC
GAGGTCTGCT TTAACAAGGG AGGCTACGGC GTGGCAGAAG TCATGATGAC TGAGTGTTCT
GACAATACGC GTTCTATCGA GGTTAAAGAG GAAGCCTATC ACTTTGTATG GTCCGGTACG
GGTATGGATG CAGACGCTCA GGCCGCCACA AGGCGCAGTA TCATAGATAC GACTAAGTGT
CAGGGTTGTC ATAATCAAGA GGTGTTCCAT TATGATAACG GCGTCAACTG TCAGACCTGT
CATACATCGG ACAAGACCAC TAAATCAGAT GACAGCTACC CCGGTGGGAA GAAACCGACC
AGCTTCGCCT ATAAGGCCCA CGCGGCTGAG GGACACTACC TGAAATATGC AGGCGTAGAA
TCCGGGACAG TGCTAAAAAC GGATTGTATG ACCTGTCACA CCGATGACGG TATAAAACTA
GGTCGCGTGA GCGATAGAGT TTGGCGCTTT GGCCATAAAA CCTCTGGTGA AGATATCTGG
GTATCATCAG ATGTGGGAAC CTGTCTCTCC TGTCATCAAA AGTACCTGAG TGATGCCGGG
GCCAGCCATA TCGTCACTAA CGGCGGTATT TTAGATGGAA CCAGTGAAGA GGATGTTCAA
ACTCGTGCCA GCGAAGCCTG CTCGACCTGT CATACACCTG AGCAATTAAT GAGCCTACAT
GCTCATTAA
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| Protein sequence | MERKIMDIKR KSSTLNLIAL TCSALLFGCG SDGKDGEDGK DGVVGVNIDS TATLSANIST
ASVTDGLITI NFDLTNANGV AVLGLTKDHD LRFGIAQLTR VSETMGDTEV DRGFNWQAYI
NAEKTPNPDW IPEGESHINP SNQYQANVEK AADCDECFLD NGDGSYAYTY QVNIAEVTEP
LTVTYSADST QRATLELELP QVTANAFLDW QPSSESSEGI QTRDVVSIET CYTCHQVESL
ALHGGRRIAI ENCASCHTST SGDPESGNSV EFTYMIHAIH KGNERMTSTA DGMVPAPYKI
IGYGGGIHDY GKVMFPQGPA ADCSSCHVEG EGAPADADLF KADLSNTACV GCHTEKPSQN
HSSTNCIGCH NSTDTYPGTG SAEKRHFDVM KAYSDARAMS VEFSNIGLTA DGKIKFDLQI
IDAAGTAIAG EFINQGTRVV VAWDSDKDYP AYNDASYSNR RIKLSEGTYD ANSKTFTITG
NNFDMPNDAD GKTFELWSAV EVCFNKGGYG VAEVMMTECS DNTRSIEVKE EAYHFVWSGT
GMDADAQAAT RRSIIDTTKC QGCHNQEVFH YDNGVNCQTC HTSDKTTKSD DSYPGGKKPT
SFAYKAHAAE GHYLKYAGVE SGTVLKTDCM TCHTDDGIKL GRVSDRVWRF GHKTSGEDIW
VSSDVGTCLS CHQKYLSDAG ASHIVTNGGI LDGTSEEDVQ TRASEACSTC HTPEQLMSLH
AH
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