| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1526 |
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| Symbol | |
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| ID | 5613219 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1816751 |
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| End bp | 1818967 |
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| Gene Length | 2217 bp |
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| Protein Length | 738 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932392 |
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| Product | decaheme cytochrome c |
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| Protein accession | YP_001473265 |
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| Protein GI | 157374665 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.324001 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAAAA AGTTCAACTC TTTTAATGCA AAAAGGAGTG CGGCAGCCAA GGCTGTACTC
AGTGCTGGGA TACTCTCTTT TGCACTTGCC GGTTGCGGCA GCGACGGTAA AGATGGTGAA
GATGGCAAAG ATGGCGTTGT TGGCGTTAAC ATCGACGCAG CAAAAAGTGT AAACGCGATA
TTTACTAACG CAACGGTTGA GGCCGGCGTC GTAACAGTCG ATTTCAAGCT TCAAAATGAC
AACGGTGTCG CCGTTCTTGG TCTGACCAAA GATCACGACT TACGTTTCGG TATCGCTCAA
CTGAGCCATG TCACCGAGAT GATGGGTGAA ACCGAAGTTG ATAGAGGCTA CCAATGGCAA
GCCTATATCA ATGCTGAAAA AACACCGAAT CCAGACTGGG TTCCTGAAGG TGAGTCACAT
ATCAACCCAT CGAACCAGTT CCAGGCTAAT GTAGAGAAAG CTGGCGACTG TGAGACATGT
TTCGTCGATA ACGAAGATGG TAGCTACACC TACACCTATC AGCAAAATAT CGGTAGTGTC
GTTGAGCCTG TCGAAGTCAC TTACAATGCA GAAGAAACTC AACGTGCCAC TATGGAACTT
GAGCTCTCAA GCTTTGCTGC CAATGCCAAC TATGACTGGC AGCCATCTAC CGGCACAACC
GAAGGCATTC AGACTCGTGA CGTAGTTTCA ATCGAAACAT GTTACACCTG TCACCAGCCA
GAGAGTCTCG AGCTTCATGG CGGCCGTCGA ATCAACATCG AAAACTGCGC ATCTTGTCAC
ACTGGCACTT CAGGCGACCC TGAAAGTGGC AACAGCGTCG ACTTTACCTT TATGATCCAT
GCGATCCATA AAGGACAAGA GAGAATGACC AGCACGGCTG AAGGCATGGT TCCTGCTCCA
TATAAAGTTA TCGGATATGG TGGCGGTGTA CATGATTACG GCAAGGTGAT GTTCCCGCAA
AAACCTGCTG CAAATTGTGC CGCTTGTCAC GTTGAAGGCG AAAATGCACC TGCAAATGCC
GATCTGTTTA AAGCAAATCT GAGCAACACA GCTTGTGTGG GTTGTCATAC AGAGAAGCCT
TCTCAAATGC ACAGCAGCAC TGACTGTATG TCTTGTCACA TCGAAGAGGG TTATGCCCGT
AGCGGTGTTG AAGCTCATGG CGATGCAACT AAAGCCTATG ACGTAAGCAA GAACTACTCG
GCAACATTCA GCAATATCAA ACCTGAAGGT CAAGGCCTGA GCTTTGATGT ACAGCTTCTT
GATGATGCTG GTGCGCCAAT TGCTAAAGAG TTTATCTACA AACTAGGTTA TTCAAACCCA
TACATCGTTG TATCTTGGGA TGTCGATGCC GATTACCCTG CATACAAAAC GGGTAGTAAA
TACTCAGAGC GTCGTATCAG CTTATATGAT GCATCACAGG CTACCTATGA TGAAGCTAAC
AAGACGTTCA GTGTTGTCAG TGCAAACATA GCGCTACCAG CTGACATCAA TGGTAAGAGC
TTCGAGCTAC TTCCTGTTGT TAAGACATGC TTTAAGAAAG GTGGCTACGG TCGTCCGCTT
GTTGAGCCTA TGTCTTGCTA CGATGACGAT GGTGTGACTA TTGCCGGCAA CGCAAAAGCG
GCCTACATCC AAGACGAGCC AATGCGCTTC ATCTGGAATA ATGGTCAATC TGAAGAGCCA
GCTGTCGCTC GTCGTTCAAT TGTTGATGAT GCCAAGTGTC ACAACTGTCA TGGCGCCGAG
TTCTACCATG ACTCTAATGG TGTCAACTGT CAGGCATGCC ACACTTCAGA TAAGGCTGTT
AAAGAGTCTG AGCGTAATTC TGGTAAGTTT GACAAGCCAA CAAGCTTCGC TTACAAAGCG
CACCACGCCG AAGGTCACTA CCTGAAGTAT GCGGGTGTTG GTTCTAAAAC GGTTGTTAAA
ACAGACTGTA AGACATGTCA TACCGATAAC GGCTTTGAGC TGGGCCGCTC TCCAGAGCGT
GTTTGGAACT ACCCTAACTT GGAGACATTG GATAGCACTG GTATCTTCGT TTCATCTGAT
GCCGGTACTT GCTTAAGCTG TCACCAGAAG TACCTTGATG ATGCGGCTAA GTCTCACATT
GTCACTAACG GCGGTATCCT TGACGGTACA AGTACAGAAG ACGTTCGAAC ACGTGCGGCT
GAAGCTTGCC AGACTTGTCA CACACCAGAA AAAGTAATAG CACTTCACGG TCACTAA
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| Protein sequence | MMKKFNSFNA KRSAAAKAVL SAGILSFALA GCGSDGKDGE DGKDGVVGVN IDAAKSVNAI
FTNATVEAGV VTVDFKLQND NGVAVLGLTK DHDLRFGIAQ LSHVTEMMGE TEVDRGYQWQ
AYINAEKTPN PDWVPEGESH INPSNQFQAN VEKAGDCETC FVDNEDGSYT YTYQQNIGSV
VEPVEVTYNA EETQRATMEL ELSSFAANAN YDWQPSTGTT EGIQTRDVVS IETCYTCHQP
ESLELHGGRR INIENCASCH TGTSGDPESG NSVDFTFMIH AIHKGQERMT STAEGMVPAP
YKVIGYGGGV HDYGKVMFPQ KPAANCAACH VEGENAPANA DLFKANLSNT ACVGCHTEKP
SQMHSSTDCM SCHIEEGYAR SGVEAHGDAT KAYDVSKNYS ATFSNIKPEG QGLSFDVQLL
DDAGAPIAKE FIYKLGYSNP YIVVSWDVDA DYPAYKTGSK YSERRISLYD ASQATYDEAN
KTFSVVSANI ALPADINGKS FELLPVVKTC FKKGGYGRPL VEPMSCYDDD GVTIAGNAKA
AYIQDEPMRF IWNNGQSEEP AVARRSIVDD AKCHNCHGAE FYHDSNGVNC QACHTSDKAV
KESERNSGKF DKPTSFAYKA HHAEGHYLKY AGVGSKTVVK TDCKTCHTDN GFELGRSPER
VWNYPNLETL DSTGIFVSSD AGTCLSCHQK YLDDAAKSHI VTNGGILDGT STEDVRTRAA
EACQTCHTPE KVIALHGH
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