| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1434 |
|---|
| Symbol | |
|---|
| ID | 5609844 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1699270 |
|---|
| End bp | 1699890 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640932300 |
|---|
| Product | tetratricopeptide TPR_4 |
|---|
| Protein accession | YP_001473173 |
|---|
| Protein GI | 157374573 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2976] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000778847 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.941681 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAAATTT ATAGCACAGA AGAACAACAA GTAGATGCTA TCAAACAGTT CTGGAAAGAT
TATGGCACAT CCATAGTCGT AGGTGCTGTG GTCGGTCTTG GCGGTTTATT CGGTTGGAAC
TATTACTCAG AATACAAGGT GGCAAAAGCC GAGTCGGCTT CTGAAGCATT TCAGGCCATG
AGTGGCAGTG CAACTTCAGA TGCCGCTATG CTGAGTGCGG CTGAAAACTT CGCTAAAGAT
CATAGCCAGA AAGGTTATCA ATCACTGTTA TCACTTATCG TTGCGAAAGC GGCGGTTGAG
TCTGGCGATC TGGACAAGGC TGAAGCGGCG CTGAAAAGCG TGATCGGATC GGCACCCGAT
GCCAGTTTAG TTATGGTCGC GACGATGCGT TTAGCTCGTG TTCAAGCCGA ACAGGGGCAG
GTCGCGACAG CGATCACGAC TCTTGAGCAA GTTTCAGACC CTGCATTTAT CGCTCAAAAA
GAAGAACTTA AAGGTGATTT CCTGGTTCGT AAAGGTGAAG CCGAGCTAGC CAAAGCCGCT
TATCAAGCTG CAGTAGATAA TGGTGGGGCG ACATCAAGCC CTGCTTTACA GATGAAGCTA
GATAATTTAA ATAAGGCATA A
|
|---|
| Protein sequence | MEIYSTEEQQ VDAIKQFWKD YGTSIVVGAV VGLGGLFGWN YYSEYKVAKA ESASEAFQAM
SGSATSDAAM LSAAENFAKD HSQKGYQSLL SLIVAKAAVE SGDLDKAEAA LKSVIGSAPD
ASLVMVATMR LARVQAEQGQ VATAITTLEQ VSDPAFIAQK EELKGDFLVR KGEAELAKAA
YQAAVDNGGA TSSPALQMKL DNLNKA
|
|---|
| |