Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1429 |
Symbol | |
ID | 5610291 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1693728 |
End bp | 1694849 |
Gene Length | 1122 bp |
Protein Length | 373 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640932295 |
Product | ribosomal RNA large subunit methyltransferase N |
Protein accession | YP_001473168 |
Protein GI | 157374568 |
COG category | [R] General function prediction only |
COG ID | [COG0820] Predicted Fe-S-cluster redox enzyme |
TIGRFAM ID | [TIGR00048] radical SAM enzyme, Cfr family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0876618 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGAAA AGAAGATCAA TTTATTGGAT CTTGACCGTA AAGGGTTAAG AGCATTATTC ACAGAAATGG GTGAAAAGCC TTTCCGTGCC GATCAATTGA TGAAGTGGAT TTATCATTTT GGCGAGACTG ATTTTGATGC GATGAACAAT ATCAATAAGG TGTTGCGAGC TAAGTTAAGT GCGCGATGTG AAGTGGTAGC GCCTGAAATT TCCAGTTACC AAAAGTCGGC TGATGGTACG ATTAAGTTCG CAATCAACGT CGGTCAGGGC CAGGAAGTCG AAACTGTCTA TATTCCAGAA GAAGATAGAG CAACTTTGTG TGTCTCTTCT CAGGTGGGTT GTGCACTGGA GTGTACTTTC TGTTCTACGG CGCAGCAGGG TTTTAACCGT AACTTAACCG TTTCCGAAAT CATCGGTCAG GTTTGGCGAG TTGCCAATTT TATCGGTTTC CAAAAAGAGA CAGGCGAAAG ACCTATCACT AACGTAGTGA TGATGGGCAT GGGTGAGCCG TTGTTAAACT TAGCTAATGT TATACCTGCA ATGGATATTA TGCTCGACGA TTTCGGCTTT AGCCTGTCTA AACGCCGTGT CACGGTATCG ACATCGGGTG TCGTTCCTGC CCTCGACAAA CTCGGTGATG CGCTCGATGT CGCTTTAGCC GTAAGTATTC ACGCACCTAA CGATGAACTG CGTGACGTCC TGGTCCCCGT CAATAAGAAA TACCCGTTGG AAGAGTTTTT GGCCGGGATC CGTCGCTATA TTGCCAAGTC CAATGCTAAC CGTGGCCGCG TTACGGTAGA GTATGTGATG TTAGACCATA TCAATGACAG TACCGATCAG GCCCATGAAC TGGCTAAATT GATGAAAGAT ACCCCATGTA AGATTAATCT GATCCCATTT AATCCTTATC CGGGCTCTCC ATACGGTCGC TCTTCTAATT CACGCATCGA TCGTTTCTCT AAAGTTCTGA TGGAATATGG GCTTACCGTT ATCGTAAGAA AAACCCGTGG AGACGATATT GATGCGGCTT GTGGACAGCT GGCAGGGGAT ATTCGCGATA GAACCAAGCG TTTAGCGAAA AAACGCATGC AAGATAGTCA GATTTCGGTC ACAATAAACT AA
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Protein sequence | MSEKKINLLD LDRKGLRALF TEMGEKPFRA DQLMKWIYHF GETDFDAMNN INKVLRAKLS ARCEVVAPEI SSYQKSADGT IKFAINVGQG QEVETVYIPE EDRATLCVSS QVGCALECTF CSTAQQGFNR NLTVSEIIGQ VWRVANFIGF QKETGERPIT NVVMMGMGEP LLNLANVIPA MDIMLDDFGF SLSKRRVTVS TSGVVPALDK LGDALDVALA VSIHAPNDEL RDVLVPVNKK YPLEEFLAGI RRYIAKSNAN RGRVTVEYVM LDHINDSTDQ AHELAKLMKD TPCKINLIPF NPYPGSPYGR SSNSRIDRFS KVLMEYGLTV IVRKTRGDDI DAACGQLAGD IRDRTKRLAK KRMQDSQISV TIN
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