Gene Ssed_1425 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1425 
Symbol 
ID5610230 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1689018 
End bp1689563 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content44% 
IMG OID640932291 
ProductGCN5-related N-acetyltransferase 
Protein accessionYP_001473164 
Protein GI157374564 
COG category[R] General function prediction only 
COG ID[COG0456] Acetyltransferases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.167968 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATCAA TTCAGATGCT CTCGCACCAG CCACAATTCT CCCTGATCCC ATATCGTGCG 
TGTTATGCCC AATCGGTAAG TCAGATTTTT CATGATGCGA TCCGTTATAT TGATGATGTG
TACTCGATAG AGCAAAAACA AGCCTGGTCA CCCAAACCCA GATCGCCCTA TCATTGGAAC
AAACGGTTAA CGAGAAGCAA AGCCTGGTTG GTTGTGGATG AGGCTATGAT TGAAGGCGGG
CACCCTAAGT GTTGTGGTTT TATCAATGTT GAGACGCACT TTAACAATAG AGGCTACATA
GACAGCCTAT ATGTTCACCC TGCTTATCAG CATTGTGGCG TTGGCCATAA ACTCTATGAA
GCTCTGGAAG AGTGGGCTTT AGAGCAGGAT TACCCTGACT TAACTGTCGA TGCATCCCTG
CTCTCTAAGT GGCTCTTTCT CTCCCATGGC TTCAAAGTGC AACATAAGAG CTATCAGGAA
AAGCTAGGCC AGATATTTAT GGGTTTTCTT ATGAGTAAGG CACTTAAAGA AACTATAAGG
TCATAA
 
Protein sequence
MSSIQMLSHQ PQFSLIPYRA CYAQSVSQIF HDAIRYIDDV YSIEQKQAWS PKPRSPYHWN 
KRLTRSKAWL VVDEAMIEGG HPKCCGFINV ETHFNNRGYI DSLYVHPAYQ HCGVGHKLYE
ALEEWALEQD YPDLTVDASL LSKWLFLSHG FKVQHKSYQE KLGQIFMGFL MSKALKETIR
S