| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1391 |
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| Symbol | |
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| ID | 5613230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1652429 |
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| End bp | 1653412 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640932256 |
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| Product | universal stress protein, UspA |
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| Protein accession | YP_001473130 |
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| Protein GI | 157374530 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAGAT TTAAAGACAT ACTTTGTGTG TTGGAACCGG TGAAAGTTTG CGAACCGGCT
CTGGAGCGTG CCGTCACTCT GGCCGAGAAT AATCAGGCCT GTTTAACTGT GGTTGACGTG
GCGCCATATG TCACTGTGGG GATTGGGATG TCTGATGGTG GCTCTGGCTT AGCCAATTTG
CAGGCCGCGA TGGTCAGTAT ACACAAACAA CGACTGGAGG CATTCGTTGA GCCGTTCGCT
AAGCGGGTTA AGATCGAAAC TAAAGTATTG GTTGGCACGC CATTCCTGGA GATCATACGT
GAGGTTCTGC GCAACGGGCG GGATCTGGTG ATCAAAGTAC CTGAATATCA GGATTGGTTA
GAACGGTTAT TTGGCAGTGA CGATATGCAT ATCTTGCGCA AGTGCCCCTG TCCGGTTTGG
TTAATCAAGT CGCAGGCCCC AAAGACCCAC AGAGTCATCC TGGCCGCAGT CGATGTCGAT
GACACCCATC AGCCGCAAGA GATGGAATCA CGACATGCAC TTAACCGTCA GGTACTCGAA
ATGGCCAGCT CTCTGGCTCT GGCCGGGGCT GCCGAGCTGC ATATCGTGCA TGCATGGAAT
GTGTTAGGAG AGGGGTCCAT GCGTCATGGG GCATTCATGA ATGCGTCGGA AAGCGAAGTC
AACGCCTGTG TCGAGCAAGT TAGACGACAA CATGAGGCTA ATCTGGATGA TCTGATGTGC
GAGGTGAGCG CCAATATGGG GCAGGATACT TTGCATTATC TTAAACCCCA AAAGCATCTG
GTGAAGGGAG GAGCTCGCAA AGAGATACCG GCGCTGGCCA GGCATATCGA CGCAGATCTT
GTTGTTATGG GAACAGTAGC CCGTACTGGT GTATCAGGCT TTATCATGGG CAATACCGCG
GAATCAATCC TGAATCAAAT CGATTGCTCC GTACTCGCGA GCAAACCACC GGGCTTTAAA
ACGCCGGTTA TATTGGACGA CTAA
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| Protein sequence | MKRFKDILCV LEPVKVCEPA LERAVTLAEN NQACLTVVDV APYVTVGIGM SDGGSGLANL
QAAMVSIHKQ RLEAFVEPFA KRVKIETKVL VGTPFLEIIR EVLRNGRDLV IKVPEYQDWL
ERLFGSDDMH ILRKCPCPVW LIKSQAPKTH RVILAAVDVD DTHQPQEMES RHALNRQVLE
MASSLALAGA AELHIVHAWN VLGEGSMRHG AFMNASESEV NACVEQVRRQ HEANLDDLMC
EVSANMGQDT LHYLKPQKHL VKGGARKEIP ALARHIDADL VVMGTVARTG VSGFIMGNTA
ESILNQIDCS VLASKPPGFK TPVILDD
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