| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1366 |
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| Symbol | |
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| ID | 5612803 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1620046 |
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| End bp | 1621035 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932231 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001473105 |
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| Protein GI | 157374505 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATCACA AGCAAACTAT TGCACAGCTA GAGGAGGAGA TAGCCCATTT ACAGAGTGAG
AACCTTAAGC TTAAAGCCCA AAAAGAGAGT GCGGAGGAGA AGTTGTCCGC GGCGCTCGAT
GGCACAGGTT TATGTTTGTG GCAGCAATAT ATTCCCACAG GTGAACTCAC CATTTTTAAC
CGGGAGTGGG GGGACCTTTT AGGTTTTACT GAGCAGGAGC TTGCCGCTAC TATTGATAGC
TGGAAAGGCA ATCTGCACCC GGAGGATAGA GATTGGGTGA TTGCCGCTTT TGACGACCAC
GTTCAAGGCA AGTCAGATAC CTACCAAGCC GTACACCGAA TGATCCATAA AGATGGCAGC
GTGAGTTGGG TGTCAGACAG GGGAAGAATT ATCGAATATG GTCCTAAAGG TGAGCCGCTT
AGGATCATGG GAACTCATAT CGATATCACC CAAGAGAAGC GTTATGAGCT GAGTCTGGCC
AAATTGGCAC ACGGAGATCC CTTAACTCAT CTATTAAATC GAAAGGCACT CGAGAAGGCC
TTTTGTGAAA ACCAGCTCGC AGAAGATGCT AACGGTGGCG CCATGTTCTT TATCGATCTC
GATGGATTTA AATCCATCAA CGACAGGCAT GGTCATAGAT TCGGTGACCT TCTGTTGATC
CATGTGGCAG ATTCACTACG CTCCATCGTG GGAGAGGACG CAAAACTTGC GCGCATGGGA
GGCGATGAGT TCGTGATCCT CCATCCGAGC TGTGATGTGG AACGACTTGC TAATGTGGCG
CAAAAGCTGC TTAAGCGATA CCACTTACCC ATAAAACTGG ACGGGAAGTT AGTTTCAATT
GGCCTGAGTA TTGGGATCAG CCTATTTAAG GGCGATGATG AGTTTATTGC TGTGTGCGAG
CATGCGGACA CAGCCATGTA TGAGGTTAAG CGTCAGGGAA AGCATAACTA TGGCTTCTGG
CAAGAACCGT TAATCTGTGC GAGTCGATAA
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| Protein sequence | MDHKQTIAQL EEEIAHLQSE NLKLKAQKES AEEKLSAALD GTGLCLWQQY IPTGELTIFN
REWGDLLGFT EQELAATIDS WKGNLHPEDR DWVIAAFDDH VQGKSDTYQA VHRMIHKDGS
VSWVSDRGRI IEYGPKGEPL RIMGTHIDIT QEKRYELSLA KLAHGDPLTH LLNRKALEKA
FCENQLAEDA NGGAMFFIDL DGFKSINDRH GHRFGDLLLI HVADSLRSIV GEDAKLARMG
GDEFVILHPS CDVERLANVA QKLLKRYHLP IKLDGKLVSI GLSIGISLFK GDDEFIAVCE
HADTAMYEVK RQGKHNYGFW QEPLICASR
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