| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1335 |
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| Symbol | |
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| ID | 5610320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1588923 |
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| End bp | 1589537 |
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| Gene Length | 615 bp |
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| Protein Length | 204 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932200 |
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| Product | ECF subfamily RNA polymerase sigma-24 factor |
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| Protein accession | YP_001473074 |
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| Protein GI | 157374474 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.253237 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.564329 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCAGAAG CATTAGAGCA GGATAAGTCT ACAGAAGCTG AGGCGGATCA ACGTTTGATG
TTGCAATATG CCGCAGGGGA TACATCGGCG TTTGAGTCTC TGTACCAGAA GCATAAGGGG
GGCCTGTATC GATATTTCGT TCGTCAAACA GGCGATCAGC AGCTTGCCGA AGATCTGTAT
CAGGAAACAT GGGGCCGCGT GATAAAGGCT GCTGTGGGTT ATGAAACCAG TGCCAAATTT
ACGACCTGGT TATATCGTAT CGCACATAAT TTGTTGATTG ATCATGTTCG GGCGGTGAAG
CCGGTCGATC TGTTCAGTGA CGCATTTAGT GAAGAGCAGG AGTGCGATAA TCAGATGTCA
TCGGATCAAT TCTCTCCCGA TAGCGCATTG GAGGAGAATA TTAAAGCTAA GCTGCTTAGA
GGGTGTATAG ACCTGTTGCC CACGGTTCAA AAAGAGACAT TTTTACTCAG CATGGAGGCG
GGGTTCACCG CAGCGGCTAT TGCAGAGATT GTAGAGGTTA CACTTGAGGC GACAAAGAGT
CGTATTCGAT ACGCAAACAG GGCGCTGAAA GAGTGTGTTA TGAATAAATG GCAGGAGGTC
GACAATGAAA GATGA
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| Protein sequence | MAEALEQDKS TEAEADQRLM LQYAAGDTSA FESLYQKHKG GLYRYFVRQT GDQQLAEDLY
QETWGRVIKA AVGYETSAKF TTWLYRIAHN LLIDHVRAVK PVDLFSDAFS EEQECDNQMS
SDQFSPDSAL EENIKAKLLR GCIDLLPTVQ KETFLLSMEA GFTAAAIAEI VEVTLEATKS
RIRYANRALK ECVMNKWQEV DNER
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