| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1328 |
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| Symbol | |
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| ID | 5610571 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1578295 |
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| End bp | 1581129 |
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| Gene Length | 2835 bp |
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| Protein Length | 944 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932193 |
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| Product | peptidase M16 domain-containing protein |
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| Protein accession | YP_001473067 |
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| Protein GI | 157374467 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0612] Predicted Zn-dependent peptidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.438205 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0130612 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAAAAAT GGATATTAGC TACGGCAATC ACTGCGATCT TAGTTGGCTG TGCAGGCCAG
CAACCGCAAT CAAGTTTACC TACAGGTGTC ACATTACTCG AAACGGTTAA AGTTGAAGAG
TCACAGGTAG GTATTCCTTA CAAAAAATAT CTATTGTCCA ACGGACTGAC CCTTATCTTG
CACCAAGATA GTTCAGATCC CTTAGTGCAT GTCGATGTGA CCTATCATGT CGGTTCTGCC
AGAGAGGTCG AAGGACGTTC TGGTTTTGCC CACCTTTTTG AACACATGAT GTTCCAGGGC
TCTGAACATG TTGGCGATGA ACAGCATTTT AAAACCGTGA CCGAAGCGGG TGGAACCCTT
AATGGTACGA CTAACACCGA CAGAACCAAC TACTTTGAGA CTGTGCCAAG TAACCAGCTG
GAAAAGATGT TGTGGCTTGA ATCTGATCGT ATGGGATTTT TCCTGCCGGC CCTGACAGAG
AAGAAGTTTG AAGTACAACG CGAAACGGTA AAGAATGAAC GCGCGCAGCG AATCGACAAT
CAGCCCTACG GGCGAATGGG TGAGCTGTTT AATCAGGCGT TCTATCCTCA GGGGCATCAA
TACTCCTGGC CTGTTATTGG CTGGCCGGAA GATCTGGAAC GTGCCGATGT CGATGATGTG
AAGCACTTTT TTCAACGTTG GTATGGCCCG AACAATGCGA CACTGACTAT TGGCGGTGAT
TTTGATGAGC TGCAGACCTT AGCTTGGGTT AATAAATATT TTGGTGAGAT CCCAAGTGGT
CCGGCAGTAA CTGCTGACGA AAAACCATTA GTCACACTCG ATAAAACTCG TTATATCTCT
ATGGAGGATA GGGTCCATCT TCCTCTGGTA CGCATCGGTT TCCCGACAGT TTATGCTCGT
CATCAGGATG AGGCTGCACT GGATCTGCTC TCTAATATTC TGGGTGGCGG AAAAACGTCA
CTATTTTATA AAAATTTAGT TAAAGACGGT TTTGCCGTTC AGGCTGGTGT GAGTCACCCT
TGTCAGGAGT TGGCTTGTCA GTTCTCTATG TATGCTCTGG CGAATCCAGC TAAGGGAGGG
CAGCTTGCGG ATCTTGAAAA AAGGATGCGA GAGTCGATCA GTGAGTTTGA ACAACGTGGT
GTGACCGATG AAGATCTGCA AAAGGTAAAG GTTCAGTTTG AGGCCAGTAC CATATTTGGT
CTTCAGAGTG TGTCTGGAAA AGTGTCGACA TTAGCGTTTA ACCAGACCTT TTCGGGCAAC
CCGGATATGA TCTCCTCTGA TTTGAAGCGT TACGCTAACG TGACCAAAGC CGATGTGATG
CGGGTCTTTA ACCGATACAT TAAAGATAAA CCTATGGTCG TGATGAGTGT GGTTCCCGAG
GGACAAAGAC AGCTCATTGC CCATGAAGAT AACTTTATTG CACCAGCACT CAATGTGTCA
GAGGTTGCCG TGCAAGGTGT TACCGATTAT CAACAGATCT CTTCATCTTT CGATCGCACA
TCGATGCCGA AAGTCGGAGC CTCTGTGGAG CTTAAATCTC CTGAGATTTG GAGCGGACAA
CTTGCGAATG GCATCGAGGT GAGTGGCACC GAGAGTGAAG AGACCCCAAC CGTTGAACTC
GTTATCTACC TCAATGGCGG TCATAGGCTC ATTCCTGTCG ATAAGGCCGG TTTAGCAGGC
TTAACGGCTT CTATGCTGAA TGAATCGAGC CAGAAAAGAA GTGCCGAAGC GCTTGCGCAG
GCGTTAGAGA TGTTAGGCAG TAGTGTTAGC TTTGGAGCAA GTAGCTATCA AAGTTACATT
AAGGTGACGA GTCTCACCTC TCATCTGGAT GAAACCTTAG ATATCGTGAG GGAACGTCTG
TTTGAACCCG GATTTAAAGT GGCAGATTTC GAGCGACTCA AGCAGCAACA GCTTCAAAGT
TTACAGCATA TGATGTCGGA TCCGGGCTAT CTGGCTAATA CCGCATTTGA TGGCTTACTC
TACGGCAATA CTAATCCACT CGGTGTGAGC AGTAGCGGCA CATTAGAGAC GGTTTCATCT
CTCACCTTAG CCGATGTAAA GGCGTTCTAT CAGCAACAAT ATAGTGCTGG GAATGCCCAA
ATTGTGGCCG TTGGTAACCT CAATGAATCA GAGATCTTAG CTGAGTTAGC TCGCTTTTCT
ACCTGGAAAG GAGAGGGGAC TCAGTTACCC GACTTAACTC AATTGCCTGA GTTGGCTGGT
GGCACCATCT ACATTCTGGA TAAGCCAGGT GCCGCTCAGT CTGTCATCAA GATAGGTAAG
CGAGCGTTAG CTTATGACGC TACGGGCGAC TTTTATAAAT CTTACCTGAT GAATTACCCG
TTAGGGGGGG CGTTTAATAG TCGTATCAAC CTCAATCTGC GCGAAGACAA AGGTTATACC
TACGGTGCCA GAAGTTATTT CTCCGGTGGC AGTGAACTGG GGGTGTTTGT CGCTCAGGCT
AATGTTCGCA GCGATGTGAC ATCACAGGCC CTTGTTGAGT TTTTCAAAGA GATTAAAGGA
TACCGTCAAT CCGGGATCAC AGACGAAGAA CTTGCTTTCA TGAAGGCTTC GGTTTCTCAA
GGTAAGGCGC TCGATTACGA AACACCTTAT CAGAAAGCCG GTTTCCTGCG TCTTATTCAA
CGTTTTGACC TCGATGCTAA CTTCACGGAG CAACAGACTG AGATCACTCA GAGCGTGACC
AAAACTGAGC TTAACCATCT GGCCAAAGAG CAGTTGGATC TCGATGAGAT GGTGGTGTTA
ATTGTGGGGG ATAAGATGAC GATAGAGGCG GATATTAAAG CACTTGGATA TCCGGTGAAA
ACTTTAGAGT TGTAA
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| Protein sequence | MKKWILATAI TAILVGCAGQ QPQSSLPTGV TLLETVKVEE SQVGIPYKKY LLSNGLTLIL
HQDSSDPLVH VDVTYHVGSA REVEGRSGFA HLFEHMMFQG SEHVGDEQHF KTVTEAGGTL
NGTTNTDRTN YFETVPSNQL EKMLWLESDR MGFFLPALTE KKFEVQRETV KNERAQRIDN
QPYGRMGELF NQAFYPQGHQ YSWPVIGWPE DLERADVDDV KHFFQRWYGP NNATLTIGGD
FDELQTLAWV NKYFGEIPSG PAVTADEKPL VTLDKTRYIS MEDRVHLPLV RIGFPTVYAR
HQDEAALDLL SNILGGGKTS LFYKNLVKDG FAVQAGVSHP CQELACQFSM YALANPAKGG
QLADLEKRMR ESISEFEQRG VTDEDLQKVK VQFEASTIFG LQSVSGKVST LAFNQTFSGN
PDMISSDLKR YANVTKADVM RVFNRYIKDK PMVVMSVVPE GQRQLIAHED NFIAPALNVS
EVAVQGVTDY QQISSSFDRT SMPKVGASVE LKSPEIWSGQ LANGIEVSGT ESEETPTVEL
VIYLNGGHRL IPVDKAGLAG LTASMLNESS QKRSAEALAQ ALEMLGSSVS FGASSYQSYI
KVTSLTSHLD ETLDIVRERL FEPGFKVADF ERLKQQQLQS LQHMMSDPGY LANTAFDGLL
YGNTNPLGVS SSGTLETVSS LTLADVKAFY QQQYSAGNAQ IVAVGNLNES EILAELARFS
TWKGEGTQLP DLTQLPELAG GTIYILDKPG AAQSVIKIGK RALAYDATGD FYKSYLMNYP
LGGAFNSRIN LNLREDKGYT YGARSYFSGG SELGVFVAQA NVRSDVTSQA LVEFFKEIKG
YRQSGITDEE LAFMKASVSQ GKALDYETPY QKAGFLRLIQ RFDLDANFTE QQTEITQSVT
KTELNHLAKE QLDLDEMVVL IVGDKMTIEA DIKALGYPVK TLEL
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