Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1299 |
Symbol | |
ID | 5611195 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1541354 |
End bp | 1543933 |
Gene Length | 2580 bp |
Protein Length | 859 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640932152 |
Product | DNA mismatch repair protein MutS |
Protein accession | YP_001473038 |
Protein GI | 157374438 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
TIGRFAM ID | [TIGR01070] DNA mismatch repair protein MutS |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.537227 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.00000000408163 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATGCTA TCGATACCCA AAATTTAGAA AAACACACAC CTATGATGCG TCAATACCTG ACGCTAAAAG CTGAACATCC GGAGATGCTG CTCTTTTATC GCATGGGTGA TTTCTATGAA CTTTTTTATG ATGACGCTAA AAAGGCTTCT GAATTATTGG GGATCTCACT CACTGCCAGA GGAAAAAGTG GCGGCGATCC CATTCCTATG GCGGGCCTGC CTTATCATGC GGTTGAAGGA TATTTAGCCA AGCTGGTCCA ACTCAGGGTG TCTGTCGCCA TTTGCGAACA AGTGGGCGAT CCGGCGACAT CTAAGGGACC GGTTGAGAGA AAGGTCGTAC GCCTTGTGAC GCCCGGTACA TTGACCGACG AGGCCCTGCT GCAAGAAAAA CAGGATAACT TGCTCGCCGC CGTTTATCAT GGCAAGAGCG GATATGGGTA CGCCACCTTA GATATCAGCT CGGGTCGATT TGTCGTCGCA GAACTTGCCT CGACCGAGGC ACTTGAAGCC GAGCTGCAAC GGACTAACCC TGCCGAGCTA CTCTATAGCG AAGATTTCTC TGAGATGGGA TTAATCTCCG GTTTTAACGG TAAACGCAGA CGTCCTGAAT GGGAGTTTGA TTTCGATACC AGCCAAAAAT TACTTCTGGA TCAATTCGGC ACAAAAGATC TCCGTGGTTT TGGCCTGGAC AATGCGCGCC TCTCACTTCA AGCTGCCGGC TGTTTAATGC AGTACGTGAA AGACACGCAA CGAACGGCAT TGCCACATAT TAATTCAATC GTTCGCTTCA ACCAAAGTGA CAGTATCGTC CTTGATGCCG CAACCCGGCG TAACCTCGAA CTCACGGTAA ACCTCCAGGG CGGTCATGAA AATACCTTAG CCTCTGTACT GGATAATACG GCAACGCCTA TGGGTAGCCG TATGCTTCAG CGCTGGATCC ATGAGCCACT AAGAAACCAA CAGCAGATCG AGTCTCGTCA GAGTGCATTA ACCGAGATAT TAGACACTAA TCTGTTCGAG ACCCTCGAAC CTCAGCTAAA AGCTTTGGGC GATGTCGAGC GGATCACCGC AAGGTTGGCC CTTCGTAGCG CAAGGCCAAG AGATTTTGCC CGCCTGAAGC AAGCCATATC CCTGTTACCC GAAATTCAGC AATCTCTTGC TAACTGCCAA TCGGCTCACC TGCATCATCT GGCAAGAATG CTCGGCGAAT TCCCCGATGA ACTTGAGCTA TTAGAGCGCG CGATTGTAGA TAACCCTCCA ATGCTTATCC GCGACGGTGG CGTACTTAAA GAGGGCTATA ATGCCGAGCT GGATCAATGG CGAGCACTGA GTCAAGGCGC GACCGATTAT CTGTCTGAGC TCGAAGCCAG AGAGAAAGAG CAAACCGGTA TATCGACACT TAAGGTCGGC TATAACCGGG TCCATGGCTA CTATATTGAG GTCAGCCGAA GAGAGTCTGA TCTGGTTCCA CTGAGCTATC AGCGCAGACA GACACTCAAA AATACTGAGC GCTACATCAT CGCAGAGCTT AAAGAGCATG AAGAGAAAGT GCTATCCAGT CAGGGAAAGG CGCTGGCACT CGAGAAACAG TTGTGGGAAC AACTCTTCGA TCAGATACTG CCTAAGCTTC ATGACTTACA ACTATTTGCA CAGGGCGCCG CCGAGCTCGA TGTAATAAAT AACTTCGCCG AGCGTGCCGA AACATTAAAT TACAGCTGCC CGACACTATC ACAAAAATCC GGTATACATA TAGAAGGCGG GCGTCACCCT GTTGTGGAAC AGGTGAGCCA AACGCCATTT ATTGCTAACC CGGTCACCTT GAATCCTGCA CGAAAAATGT TAATCGTGAC CGGACCGAAT ATGGGCGGTA AATCTACCTA CATGCGCCAG GTAGCCTTAA TTACTTTAAT GACGCACATA GGTTGTTATG TACCCGCCCA GAGTGCAGTA ATCGGTCCTG TTGACCGCAT ATTTACCCGT ATCGGTGCAG CCGACGATCT TGCTTCGGGT CGTTCAACTT TTATGGTTGA GATGACTGAA ACGGCAAATA TTCTTCATAA TGCCACCACG GAAAGTCTGG TACTGATGGA TGAGATTGGT CGAGGAACCT CGACATATGA TGGTCTCTCT CTGGCCTGGT CAGCTGCCGA ATATTTAGCT CAGAAAATTG AAGCTATGAC CCTATTTGCC ACTCACTATT TCGAACTGAC TCAACTTCCC GAGCTCATAT CCAACGTTGA AAATGTGCAC CTTGACGCTA TCGAGCATGG TGACACTATT GTGTTTATGC ATGCTGTTCA GGAAGGCGCT GCAAGTAAAA GTTATGGTTT GCAGGTTGCC GCACTGGCAG GGGTTCCAGG CAAGGTCATT ACCGCCGCAA AGCATAAGCT ACACCACTTA GAAAGTCGTG ACACGAACAG CGCCGTAGAC TCGATGACTA CCTCAAATCA ACAGAGTATG GTATTTGATG AACCAGTAAA TTCCGCCTTA AATGACGCAT TAGATAAGAT ACATCCCGAT GAATTGAGCC CAAGACAGGC ACTCGATATC TTGTATGAGC TTAAGCGGTT AACGAGCTAA
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Protein sequence | MNAIDTQNLE KHTPMMRQYL TLKAEHPEML LFYRMGDFYE LFYDDAKKAS ELLGISLTAR GKSGGDPIPM AGLPYHAVEG YLAKLVQLRV SVAICEQVGD PATSKGPVER KVVRLVTPGT LTDEALLQEK QDNLLAAVYH GKSGYGYATL DISSGRFVVA ELASTEALEA ELQRTNPAEL LYSEDFSEMG LISGFNGKRR RPEWEFDFDT SQKLLLDQFG TKDLRGFGLD NARLSLQAAG CLMQYVKDTQ RTALPHINSI VRFNQSDSIV LDAATRRNLE LTVNLQGGHE NTLASVLDNT ATPMGSRMLQ RWIHEPLRNQ QQIESRQSAL TEILDTNLFE TLEPQLKALG DVERITARLA LRSARPRDFA RLKQAISLLP EIQQSLANCQ SAHLHHLARM LGEFPDELEL LERAIVDNPP MLIRDGGVLK EGYNAELDQW RALSQGATDY LSELEAREKE QTGISTLKVG YNRVHGYYIE VSRRESDLVP LSYQRRQTLK NTERYIIAEL KEHEEKVLSS QGKALALEKQ LWEQLFDQIL PKLHDLQLFA QGAAELDVIN NFAERAETLN YSCPTLSQKS GIHIEGGRHP VVEQVSQTPF IANPVTLNPA RKMLIVTGPN MGGKSTYMRQ VALITLMTHI GCYVPAQSAV IGPVDRIFTR IGAADDLASG RSTFMVEMTE TANILHNATT ESLVLMDEIG RGTSTYDGLS LAWSAAEYLA QKIEAMTLFA THYFELTQLP ELISNVENVH LDAIEHGDTI VFMHAVQEGA ASKSYGLQVA ALAGVPGKVI TAAKHKLHHL ESRDTNSAVD SMTTSNQQSM VFDEPVNSAL NDALDKIHPD ELSPRQALDI LYELKRLTS
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