| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1287 |
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| Symbol | |
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| ID | 5611141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1528439 |
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| End bp | 1530646 |
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| Gene Length | 2208 bp |
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| Protein Length | 735 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932140 |
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| Product | GTP diphosphokinase |
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| Protein accession | YP_001473026 |
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| Protein GI | 157374426 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000126799 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000190177 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGGTATCAG TTCGAGAAGC ACATTTTAGT GATCCGGATT TTCAGCTGGA GGAGTGGGTC
AATCGCTACA TTAGTGATAC GGATGAAGCC CAGACTTTAC TTGAACTGAT CAGCCGTATC
GAGATGATGG TGGCCGAGAG TAAAGAGGAT AATGATCTTC TTAACCAACG TGCAAGAGAG
ATGATTGAGA TCTTGGCACC GCTGAATATG GATATTGAGA CGCTCCAGGC TTCGGTACTG
TTTGTAATTT TCGATGCGGG GATCTTGTCT AAAGAAAAAT TAGAGGAGAC CTTCGGGAGC
GGGCTGGCTA GATTGGTGAG CAGTGTCGAA ACCATGAATG CCATTGGTGC CCTTAAAATC
GATAACCAAT CCCGGGCCGG AGAGCCCCAG ATAGATAATA TTCGCCGTAT GCTTCTGGCC
ATGGTCGAAG ATGTACGCGC CGTCGTGATT AAACTCGCCG AACGGATCTG TCTGCTGCGG
GAGGTGAAAA ATGCCGAAGA AGAGACTCGG GTTTTGTTGG CCCGTGAAAT TGCCGATATC
TATGCACCGT TAGCGAACCG ACTCGGTATC GGGCAGCTCA AGTGGGAACT TGAAGATATC
TCATTTCGCT ATCTCCACCC TGAAACTTAC AAAGAGATCG CCAAGCAACT CGATGGTAAA
CGACTCGATC GTGAAACCTT TATCGATGAC TTTGTCGCTC GGCTTCAGGC CAGATTAGAT
AAAGATCAGA TCAGAGCGAA AGTCTATGGT CGTCCTAAGC ATATCTACAG CATCTGGAAA
AAAATGAAGG GCAAAGATCT CACGTTCGAT GAGCTATTCG ATGTCAGAGC CGTTCGAATT
GTGACGGACA GGCTTCAGGA CTGTTACGGT GCTCTCGGCG TTGTTCATAC ACTTTGGCAC
CATATTCCAC GCGAATTCGA TGACTATGTT GCGAACCCTA AGCCTAATGG ATATCAATCT
ATTCATACTA TTGTCGTCGG GCCGGAGGGG AAAACGGTAG AGATTCAGAT CCGTACCGAG
CAGATGCATG AGGATGCCGA GCTTGGTGTT GCAGCCCACT GGAAATATAA AGAGGGGGCG
AGTGGTGGCA AGCAGAGCGG TTATGAGGAG AAAATTAACT GGCTGCGTAA AATTCTTCAA
TGGCAAGAGG ATGTCGCTGA AAGTGGCAAC CTGGTCGAAG AGGTTCGCAG TCAGGTTTTC
GAGGATCGCG TCTACGTATT TACCCCTAAC GGTGAAGTTG TCGACCTGCC TTTGGGCTCA
ACCGTGCTGG ATTTCGCTTA CTACATTCAC TCTCACGTTG GCCACAAATG TATCGGCGCT
AAGGTCGATG GCAGAATTGT GCCATTTACC TATCAGGTCG AAACCGGTGA GCGGATTGAG
ATCATTACCT CTAAGCATCC AAATCCAAAA CGAGACTGGC TAAACCCTAA CTTAGGCTAC
ATTCGTACCT CTCGTGCACG TTCGAAAATC CAGCACTGGT TTAAACAGCA AGACAGAGAT
AAAAACATCG TTGCCGGTAA AGAGATGCTC GAAGCGGAGC TTTCACGTTC CGGTTTGAAA
ATCAAAGATG CGCAAAGTGC CGTTGAGCGC TTTAATATGG TTAGCATGGA TGATCTTCTT
GCTGGAATTG GTGGCGGCGA TGTTCGTCTC AATCAGGTGG TAAACCATGT TCAAAGCCAG
ATGCGGATCA ACGATCTGAC TGAAGAGGAA GTGGTCGAAG ACCTGGTTAA AAAGAGCCAG
AGCAAGTCCA CCCGAAAGGG TAAAGGCCAG GTTGAGGTCA ATGGCGTAGG TAACTTAATG
AGCCATATTG CCCGGTGTTG TCAACCTGTA CCGGGAGATG AAATTTTCGG TTTTATCACC
AAAGGGCGTG GTATTTCAGT TCATAGAGCC GATTGTGAAC AGGTAAAAGA GTTGATGCGT
GCTCATCCGG AACGTGTTGT GGATGTTGTG TGGGGAGAGA ACTACTCCGG GGGATACAAG
ATCCGTATGC GAATTATAGC CAGTGATCGC TCAGGGTTAC TGCGTGACTT AACCTCTGTG
CTTGCGGCCG AGAAAACCCA TGTTATGGCG ATGAGCTCCT CATCAGATGT TAAAACTCAA
ACCGCAGCGA TTGAGCTGGA ACTCGAACTC TACAATTTAG ATGATTTATC GAGAGTGATC
GCTAAGCTGA CTCAAATTGA TGGAGTGAGT GAAGCCAGAA GGCTATAA
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| Protein sequence | MVSVREAHFS DPDFQLEEWV NRYISDTDEA QTLLELISRI EMMVAESKED NDLLNQRARE
MIEILAPLNM DIETLQASVL FVIFDAGILS KEKLEETFGS GLARLVSSVE TMNAIGALKI
DNQSRAGEPQ IDNIRRMLLA MVEDVRAVVI KLAERICLLR EVKNAEEETR VLLAREIADI
YAPLANRLGI GQLKWELEDI SFRYLHPETY KEIAKQLDGK RLDRETFIDD FVARLQARLD
KDQIRAKVYG RPKHIYSIWK KMKGKDLTFD ELFDVRAVRI VTDRLQDCYG ALGVVHTLWH
HIPREFDDYV ANPKPNGYQS IHTIVVGPEG KTVEIQIRTE QMHEDAELGV AAHWKYKEGA
SGGKQSGYEE KINWLRKILQ WQEDVAESGN LVEEVRSQVF EDRVYVFTPN GEVVDLPLGS
TVLDFAYYIH SHVGHKCIGA KVDGRIVPFT YQVETGERIE IITSKHPNPK RDWLNPNLGY
IRTSRARSKI QHWFKQQDRD KNIVAGKEML EAELSRSGLK IKDAQSAVER FNMVSMDDLL
AGIGGGDVRL NQVVNHVQSQ MRINDLTEEE VVEDLVKKSQ SKSTRKGKGQ VEVNGVGNLM
SHIARCCQPV PGDEIFGFIT KGRGISVHRA DCEQVKELMR AHPERVVDVV WGENYSGGYK
IRMRIIASDR SGLLRDLTSV LAAEKTHVMA MSSSSDVKTQ TAAIELELEL YNLDDLSRVI
AKLTQIDGVS EARRL
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