Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1281 |
Symbol | |
ID | 5613733 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1519990 |
End bp | 1521651 |
Gene Length | 1662 bp |
Protein Length | 553 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640932134 |
Product | recombination and repair protein |
Protein accession | YP_001473020 |
Protein GI | 157374420 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0497] ATPase involved in DNA repair |
TIGRFAM ID | [TIGR00634] DNA repair protein RecN |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000000117137 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGCTTTGCC AACTCAGTAT CAATAACTTT GCCATCGTCC GCTTTCTGGA GCTTGATTTC AAACCTGGAA TGACGAGTAT CACAGGCGAA ACGGGTGCGG GTAAGTCGAT AGCAATTGAT GCTTTAGGAC TCTGTCTGGG TAATCGAGCC GATACCAATA CGCTCAGGCC TGGGGCGACT AAGGCTGAGT TTAGTGCCAG GTTTTCTCTG GGTGATGTGC CACTGGCGAA GCGATGGCTT GAAGATAATG ACCTTGAGTT GGGTGATGAA TGTATCCTGA GGCGCACTAT CGGCGGTGAC GGCCGCTCCA GAGCTTACAT TAATGGTAAC CCTGTGCCAT TAGCCCAAAT TAAAAACCTT GGACAGCTCT TAATCGGGAT CCACGGCCAG CATGCTCACC ATGCAATGCT AAAAAGTGAA CACCAACTGA CCCTACTCGA CAGCTACGCC AACCATAGGC TATTGCTGGA GTCTGTATCG AGCAGTTTCC AACGGAGTAA GCTTATCGAA AAAGAACTTA AGATACTTCA ACAATCACAG CATGAACGCA TAGCCAGAAA ACAACTGCTT CAGTATCAGG TTGAAGAGCT GAACGAGTTT GCCCTATCCG ACGGAGAGTT TGAACAGATA GAGGCAGAGC ATAAGAGACT GGCAAATGGT ACTGCGCTGA TTGAAGCATG TCGTAATGAA CTCTTTATCC TGCAAGACAA TGACCAAGGC AGTGTAGAGT CACTCATCAA CGCCGGAATA GGTCAGGCTC AGGAACTAGA AAGCTATGAT CCACAGCTAA ATAGTGTGGT TAACATGCTA AACGAGGCAC TCATTCAAGT TCAAGAGAGC AGTAGCGAAC TGGAACGTTA TCTTGAAGGA TTGGAACTCG ACCCGGAGCA CTTTTCCTAC CTCGAGCAAC GACTTTCGAA AGTCATGCTC CTGTCTCGAA AACATCAAGT GACTCCCACT GATCTCTATG CACACCACCA GACTCTGGTC GGCGAGCTTA CATCACTCGA TTCTGACGAG GAAGCACTCA CTTCACTGCA GGAGCAGGTT GATGCGAGTC GGGCAAACTT CATCGCTCAT GCAAAAAAAC TCAGCCTGAG CCGCATCCGT TATGCCAAAG AGCTTGATAA GAAAGTCACT CAATCTATTC ACGAATTGAG TATGCCCAAA GGAAAGTTCT GTATCTCGGT AAACTTCAAT GAATCTCATA TCTCCCCTAA CGGCTGTGAC AATATAGAGT TTCTGGTTAC CACTAACCCG GGGCAACCAC TACAACCCAT ATCTAAAGTC GCTTCGGGTG GTGAATTGTC ACGTATCGGT TTAGGTATTC AGGTGATCAC CGCCAAGAAG GTCTCCACGC CGACACTGAT ATTCGACGAA GTCGATGTAG GGATATCGGG CTCGACCGCA GCGGTCGTAG GTAAAATGCT TCGTAGCTTA GGTGAATCGA CTCAGGTTCT GTGTGTAACT CACCTGCCTC AAGTGGCTGG TAAGGGCCAT CAACATATGT TCGTCAATAA GCAGAGCAGA GCCGGGAAAA CAGAAACCTC TATGGTGCCA TTAGATAAGA CACAGCGCAT CGAGGAGTTG GCTCGGTTAC TGGGTGGCGA TGTTATCACC AGCAACACAC TAGCCAATGC GAAAGAGCTT TTACACTCCT AG
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Protein sequence | MLCQLSINNF AIVRFLELDF KPGMTSITGE TGAGKSIAID ALGLCLGNRA DTNTLRPGAT KAEFSARFSL GDVPLAKRWL EDNDLELGDE CILRRTIGGD GRSRAYINGN PVPLAQIKNL GQLLIGIHGQ HAHHAMLKSE HQLTLLDSYA NHRLLLESVS SSFQRSKLIE KELKILQQSQ HERIARKQLL QYQVEELNEF ALSDGEFEQI EAEHKRLANG TALIEACRNE LFILQDNDQG SVESLINAGI GQAQELESYD PQLNSVVNML NEALIQVQES SSELERYLEG LELDPEHFSY LEQRLSKVML LSRKHQVTPT DLYAHHQTLV GELTSLDSDE EALTSLQEQV DASRANFIAH AKKLSLSRIR YAKELDKKVT QSIHELSMPK GKFCISVNFN ESHISPNGCD NIEFLVTTNP GQPLQPISKV ASGGELSRIG LGIQVITAKK VSTPTLIFDE VDVGISGSTA AVVGKMLRSL GESTQVLCVT HLPQVAGKGH QHMFVNKQSR AGKTETSMVP LDKTQRIEEL ARLLGGDVIT SNTLANAKEL LHS
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