Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1262 |
Symbol | |
ID | 5614230 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1497399 |
End bp | 1499039 |
Gene Length | 1641 bp |
Protein Length | 546 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640932115 |
Product | sulfotransferase |
Protein accession | YP_001473001 |
Protein GI | 157374401 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0215668 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTGCA ATTTAGGGAT TAGAATAGGC CATGAAGATA ATAATAAGAA AAAGGAAATG GAATTGAACA GAGAAGAGCG CTACCTCAGT GATGCAAAAG CCTTTTATTC TGAGAAGAAA TTCTCATCGG CCGGTATGTA CGCAAGAAAG GTGCTTCGCC GTAACCCGGA GCAATGTGAT GCATTGATTA TTCTGGCCCG CCTTGCGCTA AAAAATAACG ATCTTAAAGA AGCGCTCAGA ATATTCTCCC TTATCAAAAC GCTCGCTCCG AACTCTTTTG AGGCCATTTC GGGACTAGTC TTTATCGCCG AGAAGCGAGA AGACTTTTTT GCTGCATATC GATATCTGGT CACTCTCGTC GAACTTATGC CTGAAAATCA CGAAAATTGG TTTAAGCTTG GTATCATGGC TAGCAAGATA GGTTTAATGG ATGAGGCTGA AGAAGCATTC AATTTCTGTC ATAACAAGAG ATCAGTTGAG CCTTCGGTAT TACTTAACTT AGGTCATGTT TACAAAGCTA AAGGCGATAC CGCAAAAGCC GCAGAGTTTT ACCACAACTA CATAAAGGCG GGTCCTGACC ATCAGGCTGT AGGTTATTGG AGCCTTGCCG ATCTTAAAAA TTATTCATTT ACCGATACTG ACGCAAAGTC ACTAAAAACT AACCTGGAAT CAAGCCAATA TTCGAATGCC AGTCGTTCAC TCTTTCTGTT TGCTCAGAGT CGTATTTTCG AGCAAAAGCA TGATTATGAG CAGTCATTCA ATTCAGTAAG TGAAGCTAAC CGACTGATGC AGGGGTTACG TCCATTTAAA GCCGCTCCTT TTAGTCACAT CATCGATTCT CTGCTCGAAT GCACTCCAGT TAAAAAAGAT AAGAGTCAGT CGTGCGCTAC TCAACAAACG CCAATATTTA TTGTTGGCAT GCCGAGATCG GGTACTACGC TTACCGAACA GATTTTAGCT AGCCACTCGC TGGTCGAGGC TACCGATGAG CTGCCTTACA TGGAACGCTT GGCTTTAGAG TTAGACATGT CTGGCGGGTA TGCTAAATGG CTGGCAAGGT TAACTGATGA GAAGCTTGAT AGTTTAAGGC GGCAGTATTT AAGTCAAGTC TCACAATACT TTGAAAGTAC CCCTGAGTAT TTTATCGATA AAAATCCAAA TAATTTTTTG CATATCGGCT TAATTAAAAC TCTGTTTCCC GATGCCAAGA TCGTCAATGT CATTCGGGAT GCTAATGATA ATGCCATGGG GGTGTTTAAG CAGCACTTTA GTCGTGGACA CGACTACTCT TACTCACTCG ATAATATTGT CGTGTATTGG AAGCGCTATG TGGATTTGAT GAGACATTGG ACTGACTTGT ATGGCGAGGA TATTTATCAT CTCAGCTTTG AAAAGTTAGT TCATTCTCCC GATGACGAGA TAGCTAAGCT ACTCAATTAC TGTGGGTTAT CGTTTGAGGA TCAATGTTTA ACTTTTTATA AATCAAAAAG AACGGTGTTA ACCCCAAGTG CGAGCCAAGT CAGGCAGCCT ATGAATACTA AAGCGATTGG ACAGAGCCAA AAGTATCAGG CTTATATGCC GAGCAGTTAT CAGCAACTTG CGGGGATTGC TGAAAAGGTA AAATCTGAAT TTTTATCCTA A
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Protein sequence | MDCNLGIRIG HEDNNKKKEM ELNREERYLS DAKAFYSEKK FSSAGMYARK VLRRNPEQCD ALIILARLAL KNNDLKEALR IFSLIKTLAP NSFEAISGLV FIAEKREDFF AAYRYLVTLV ELMPENHENW FKLGIMASKI GLMDEAEEAF NFCHNKRSVE PSVLLNLGHV YKAKGDTAKA AEFYHNYIKA GPDHQAVGYW SLADLKNYSF TDTDAKSLKT NLESSQYSNA SRSLFLFAQS RIFEQKHDYE QSFNSVSEAN RLMQGLRPFK AAPFSHIIDS LLECTPVKKD KSQSCATQQT PIFIVGMPRS GTTLTEQILA SHSLVEATDE LPYMERLALE LDMSGGYAKW LARLTDEKLD SLRRQYLSQV SQYFESTPEY FIDKNPNNFL HIGLIKTLFP DAKIVNVIRD ANDNAMGVFK QHFSRGHDYS YSLDNIVVYW KRYVDLMRHW TDLYGEDIYH LSFEKLVHSP DDEIAKLLNY CGLSFEDQCL TFYKSKRTVL TPSASQVRQP MNTKAIGQSQ KYQAYMPSSY QQLAGIAEKV KSEFLS
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