Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1256 |
Symbol | |
ID | 5614103 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1488469 |
End bp | 1491585 |
Gene Length | 3117 bp |
Protein Length | 1038 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640932109 |
Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
Protein accession | YP_001472995 |
Protein GI | 157374395 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.393229 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.26342 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTAGTG AATTCTTTAT TAACAGGCCT AAGTTCGCCT TTGTTATTTC TACTGTGTTG ACCTTGGTTG GACTTATCTC CATTCCTATT TTATCAGTGT CTGAGTTTCC TGAAATAGCG CCACCTCAAA TTAACGTGTC TACGAGTTAT TCCGGTGCGA GTGCCGGTGT GGTTAAAGAT ACCATAGCTC AGCCACTCGA GGCTGAGGTC AATGGCGTCG AAGGTATGCT CTATATGGAG TCTAAGAGTG CCAACGATGG AAGTTACGCA TTAAATGTAA CATTCGAAGT GGGCACAGAT GCCGATATGG CGCAGGTTAA AGTACAAAAC AGAGTGCAGC AGGCGATGCC GCGTCTGCCC GAAGAGGTTA AACGTCAGGG GGTTAAAGTC GAGAAACAGA GCCCCAATAT GTTGATGGTG GTGAATCTGG TTTCCCCCAA CGAGACCTTC GACTCGCTGT TTATTACTAA CTATGCCGGA TTGAATATCA AGGATGCGCT TGCTCGTCAA AATGGTGTCT CTAAGGTTCA AGTGATCGGC TCGCTCGATT ACGCAATTCG GATCTGGCTC GATCCCAATC AAATGGCAAG CTTTGGTGTG ACAGCAAAAG ATGTGATTGC TGCTTTGCAG GAGCAAAATA TCCAAGTTGC GGCTGGACGC ATCGGTGCTG CGCCTGTGGA TCCAGATCAG CAGTTTCAGT ACACCTTACA AACTAAAGGG CGCTTGAAAG ATCCACAGGA GTTTAAGGAT GTTATGATCC GAGCGAACAA CGATGGTTCC AAAGTCGTTG TCAGCGATGT GGCTCGTGTC GAGTTAGGTT CTCAAACCTA TGATGCACAA GGTAAGTTAA ACAATAAGCC TTCGGCAATT ATTGCTGTTT ATCAGTCACC TGATGCTAAT GCATTGGAAG TTGCCGCCGG AATTAAAACC GAGATGGCTA AGTTGTCAGA GCGTTTTCCA ACGGATCTGG AATACGAAGT GCTTTATGAC ACGACTGAGT TCGTTGAAAC TTCGATTACA GAGGTAGTAC AGACCCTCTT CATCTCTATC TCGCTGGTTG TATTAGTTGT TTATATCTTC TTGCAGGATG CACGCTCGAC TCTGGTTCCC GGAATTGCGA TTCCGGTTTC CTTAATTGGT ACCTTTGCGT TCCTGCTCTT GTTTGGCATG AGCATTAATA CCGTGTCTCT GTTCGCATTG ATCTTAGCCA TTGGTATTGT GGTAGATGAT GCGATCGTGG TGGTAGAGAA CGTGACTCGT CTGATGCAGG ATGAAGGTCT CTCTCCAAAG GAGGCGACAT CTAAGGCGAT GAAAGAGGTT ACCGGCCCTA TTATTGCGAC CACCTTGGTG TTGCTTGCTG TTTTTGCTCC CACGGCTGTC ATGCCTGGTA TTACCGGACA GATGTATGCA CAGTTCTCTG TGACCATCTG TATCGCTGTA CTTATCTCCT CAATAAACGC ACTAACCTTG AGTCCGGCGC TATGTGCCTC GTTACTCAGA GCACCTAAAC AGCATGAAAC AGGTTTTCAT GCCTCGTTTA ATAAATACTT TGAACGTTTC ACCGGTAAGT ACATGGGGCT CGTCTCATCA TTGACCCGTA AGCTGTCTTT AGTGGTTGTG GTTTATGTCT GTTTAATTGC CGTCACGGGC GGAGTGGCAA AAATCTTACC TTCAGGCTTT GTGCCTATGG AAGATAAGAA AGCCTTTATG GTCGATATCC AACTTCCCGA TGGTGCATCA CTTAACCGTA CAGAAGAGGT GATGAAAGAG TTAGTCGAGT TGACTCTGGC TGAACCTGGT GTTGAGAATG TGATCCACGC CAGTGGTTTC AGTATCTTAA CCGGTTCAGT ATCGTCCAAT GGTGGCTTGA TGATCGTTAC CCTCTCCTCC TGGGAGGAGC GAGATACTCC AGATATGGTC GAGGCGGCTA TCGTGGCTAA GCTTCAGGTC AAATATGCAG CTAACCCTTC GGTGAAAGCC ATGGCGTTCT CATTGCCGCC AATTCCGGGG GTGGGTAGTG TGGGAGGATT TGAGTTTGTG CTGCAAGATA CTCAAGGTCG CTCACCTCAA GAGTTGGCTT CTGTTATGCG AGCCCTGATA ATGGAAGCTA ATTCGCAGCC AGAAATCGCC ATGGCATTTA GTAACTTCCG TGCCGATGTT CCGCAGATGT ATGTGGATGT CGATAGGGAT AAAGCCAAGG CGTTAGGGAT CTCATTGAAC GAGATATTCA CAACTATGCA GACCATGCTT GGGTCTATGT ATGTGAATGA CTTTAACCGT TACGGTAAGG TGTTTAGAGT TATTGTGCAG GCCGAAGGTG AGTTTCGTAA TTCGGATAGG GATATTTCCA GTTTCTACGT GCGCTCGGCA AGTGGTGAGA TGGTGCCTCT GAGCACGCTG GTAACGGTGA CGCCTATCTT AGGCCCCGAT GTGATGAACT CATACAATAT GTTTAGTTCG ACTACCATTA ACGGCTTCCC GGCGGCAGGG TTTAGCTCGG GGGACGCGAT TAAGGCGATG GAGCGTGCGG CAGAGCAGAG TCTGCCTACA GGTTATAGCT ATCAATGGAC CGGTCAGACG TTTCAGGAGA TTAAGGCGGG CAATTTAGCG CCACTTATCT TTGGTTTGGC GTTAGTGTTT ACTTATCTTT TCCTGGTGGC TCAGTATGAG AGCTGGACAA TTCCGTTTGC GGTAATGCTG GCGGTACCTA TTGCATTACT TGGGGCCTTC CTTAATATTT GGCTGATGGG AACAGACCTG AACCTCTATG CTCAGATTGG TTTGGTGCTC TTGATTGGAC TGGCTTGTAA GAATGCAATC TTGATCGTTG AATTTGCAAA ACAGCTAAGA GAAGAGGGGA AGAGTATTCT CGATGCGGGT GAAACGGCTG CCAGACTGCG TTTTCGTGCG GTATTAATGA CAGCCTTCTC TTTCCTGCTC GGTGTGCTTC CTCTGGTCAT TGCGACTGGT GCTGGAGCGG GGAGTCGTCG TGCTCTGGGT TACTCAGTGT TCGGCGGCAT GCTTGCAGCG ACTATTGTTG GTACTCTGCT GGTTCCTGTG TTTTATGTGA TGATGCAAAA GCTCAGAGAG CGAGTGAAAG GTGAGGCGAA AGCTTAG
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Protein sequence | MISEFFINRP KFAFVISTVL TLVGLISIPI LSVSEFPEIA PPQINVSTSY SGASAGVVKD TIAQPLEAEV NGVEGMLYME SKSANDGSYA LNVTFEVGTD ADMAQVKVQN RVQQAMPRLP EEVKRQGVKV EKQSPNMLMV VNLVSPNETF DSLFITNYAG LNIKDALARQ NGVSKVQVIG SLDYAIRIWL DPNQMASFGV TAKDVIAALQ EQNIQVAAGR IGAAPVDPDQ QFQYTLQTKG RLKDPQEFKD VMIRANNDGS KVVVSDVARV ELGSQTYDAQ GKLNNKPSAI IAVYQSPDAN ALEVAAGIKT EMAKLSERFP TDLEYEVLYD TTEFVETSIT EVVQTLFISI SLVVLVVYIF LQDARSTLVP GIAIPVSLIG TFAFLLLFGM SINTVSLFAL ILAIGIVVDD AIVVVENVTR LMQDEGLSPK EATSKAMKEV TGPIIATTLV LLAVFAPTAV MPGITGQMYA QFSVTICIAV LISSINALTL SPALCASLLR APKQHETGFH ASFNKYFERF TGKYMGLVSS LTRKLSLVVV VYVCLIAVTG GVAKILPSGF VPMEDKKAFM VDIQLPDGAS LNRTEEVMKE LVELTLAEPG VENVIHASGF SILTGSVSSN GGLMIVTLSS WEERDTPDMV EAAIVAKLQV KYAANPSVKA MAFSLPPIPG VGSVGGFEFV LQDTQGRSPQ ELASVMRALI MEANSQPEIA MAFSNFRADV PQMYVDVDRD KAKALGISLN EIFTTMQTML GSMYVNDFNR YGKVFRVIVQ AEGEFRNSDR DISSFYVRSA SGEMVPLSTL VTVTPILGPD VMNSYNMFSS TTINGFPAAG FSSGDAIKAM ERAAEQSLPT GYSYQWTGQT FQEIKAGNLA PLIFGLALVF TYLFLVAQYE SWTIPFAVML AVPIALLGAF LNIWLMGTDL NLYAQIGLVL LIGLACKNAI LIVEFAKQLR EEGKSILDAG ETAARLRFRA VLMTAFSFLL GVLPLVIATG AGAGSRRALG YSVFGGMLAA TIVGTLLVPV FYVMMQKLRE RVKGEAKA
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