Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1247 |
Symbol | |
ID | 5609787 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1478254 |
End bp | 1479264 |
Gene Length | 1011 bp |
Protein Length | 336 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640932100 |
Product | threonine aldolase |
Protein accession | YP_001472986 |
Protein GI | 157374386 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2008] Threonine aldolase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0103654 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.613699 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAGATT TTCGTAGCGA TACCGTGACC ATGCCGACAG AGGCGATGCG TAAAGCGATG GCGACTGCCG AAGTTGGGGA TGATGTTTAT GGTGATGATC CGACAGTAAA TCGTTTAGAG GCACTGGCTG CTGAAATGTA TGGTTTCGAT GGCGCTTTGT TTACCTCATC GGGTACACAA GCTAATTTGT TAGCCTTGAT GTCACATTGT GAGCGTGGCG ATGAATATAT CTGTGGTCAA CAGGCTCATA ACTATAAATT TGAAGGCGGC GGCGCCGCGG TGCTTGGTAG CATCCAACCT CAGCCCCTGA ACAATCAAGA TGATGGTTCG ATTTTACTGT CGGATATCAA AGGGGCAATC AAGCCCGATG ACGTGCATTT TGCCAATACG CGACTGGTGA GTTTAGAAAA TACTATCGGC GGTAAGGTGC TTCCCCAGAG TTATATTGCC GAGGCTCAAC AGTTAGCTTT TAACCATGGG TTAAAAATTC ACCTCGACGG GGCGCGAGTT GCTAATGCGG CCGTTGCTCA GAATATTGCG ATTAGCGAGA TCACTCAATA TTTTGATTCT GTCTCTATCT GCTTATCTAA AGGCCTTTGT GCTCCGGTGG GCTCTATCCT GTTGGGTGAT GAACGCTTGA TAGGTAAAGC GAGACGCTGG CGTAAAATGT TAGGTGGCGG AATGCGTCAG GCCGGTATAC TTGCTGCGGC AGCGAGTTTA GCGATAACGG ATCAGGTTGA GCGCTTAGCC ATCGATCATG ATAATGCCGG TTATCTTGCA GAGCAGCTGT CTATGCTGAC AGAGTTCAGA GTCGATCTCG CCCAAGTTCA GACAAATATG GTATTCGCAC ATGTAAATGA TGGCGTAGAT ATAAGCTCCC TTGCCGTTAA ACTAAAGCAG AGTGGGATCT TGATAAGCTC TGGTTCCACA CTCAGGTTAG TGACTCATGC CGATATAAGT CGCGCCGATA TTGATACCTT TATTGGTGAA CTTAAGCGTT ATCTGAAATA G
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Protein sequence | MIDFRSDTVT MPTEAMRKAM ATAEVGDDVY GDDPTVNRLE ALAAEMYGFD GALFTSSGTQ ANLLALMSHC ERGDEYICGQ QAHNYKFEGG GAAVLGSIQP QPLNNQDDGS ILLSDIKGAI KPDDVHFANT RLVSLENTIG GKVLPQSYIA EAQQLAFNHG LKIHLDGARV ANAAVAQNIA ISEITQYFDS VSICLSKGLC APVGSILLGD ERLIGKARRW RKMLGGGMRQ AGILAAAASL AITDQVERLA IDHDNAGYLA EQLSMLTEFR VDLAQVQTNM VFAHVNDGVD ISSLAVKLKQ SGILISSGST LRLVTHADIS RADIDTFIGE LKRYLK
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