| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1197 |
|---|
| Symbol | ispH |
|---|
| ID | 5613196 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1424813 |
|---|
| End bp | 1425760 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640932046 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_001472936 |
|---|
| Protein GI | 157374336 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0059594 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGAAG CTAAGAGTCT GCAGATAAAA CTGGCAAATC CCAGAGGTTT TTGCGCCGGT
GTCGATAGAG CTATCAGCAT TGTTGAACGT GCGTTAGAGC TTTTCTCACC ACCTATTTAT
GTGCGTCATG AAGTCGTACA TAACCGCTAT GTGGTACAGA ACCTTAAAGA CCGAGGTGCT
GTGTTTGTCG AAGAGCTTGA TCAGGTTCCC GATGACAGTA TCGTGATTTT TAGTGCTCAT
GGTGTATCAC AAGCCGTGAG AGCCGAAGCA AAACACCGTG GTTTAAAAGT ATTTGATGCG
ACTTGTCCTT TGGTGACTAA GGTTCATCTG CAGGTGACCC GTGCCAGCCG TAAAGGCATT
GAGTGTATTC TGATTGGCCA TGCGGGCCAT CCTGAGGTTG AAGGCACCAT GGGGCAGTAT
AATAACCCCA ATGGTGGTGT GCTTCTGGTT GAGTCTCCGG CCGATGTAGA GTCCTTAGTC
GTCAAAGATG AGGATAACTT ATGCTTTGTT ACTCAAACGA CCCTTTCGAT GGACGATACT
AAGGATGTTA TCGAGGCACT TCAGAAGCGC TTCCCGGCGA TTCAAGGCCC TCGAAAGGAT
GACATCTGCT ATGCTACCCA AAACAGGCAA GATGCCGTGC GCAACGTTGC AGATGATGTC
GACCTGTTTC TTGTGGTTGG TTCGAAGAAC AGTTCCAATT CAAATCGACT TCGCGAGTTA
GCCCAGAAGA AAGGTACGCA AGCTTATCTG GTCGACAATT CAGAAGATAT AGATGCTGTT
TGGTTCGATG GCGTCACCAA AGTTGCTGTG ACCGCCGGAG CCTCGGCTCC AGAAGTGCTT
GTTAAACAAG TCATAGACGC TGTCGCCAAG CTTGCTCCCA GTGTTATCAC CGAGGTGGAA
GGGCGTAAAG AAGATACCGT TTTTGCCGTA CCGGCAGAAC TCAGGTAA
|
|---|
| Protein sequence | MQEAKSLQIK LANPRGFCAG VDRAISIVER ALELFSPPIY VRHEVVHNRY VVQNLKDRGA
VFVEELDQVP DDSIVIFSAH GVSQAVRAEA KHRGLKVFDA TCPLVTKVHL QVTRASRKGI
ECILIGHAGH PEVEGTMGQY NNPNGGVLLV ESPADVESLV VKDEDNLCFV TQTTLSMDDT
KDVIEALQKR FPAIQGPRKD DICYATQNRQ DAVRNVADDV DLFLVVGSKN SSNSNRLREL
AQKKGTQAYL VDNSEDIDAV WFDGVTKVAV TAGASAPEVL VKQVIDAVAK LAPSVITEVE
GRKEDTVFAV PAELR
|
|---|
| |