Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1154 |
Symbol | |
ID | 5609876 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1373792 |
End bp | 1374814 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640932003 |
Product | sensory box protein |
Protein accession | YP_001472893 |
Protein GI | 157374293 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGATA CCTATAAACA TAGTGAAGTC ACAGAGTCAG ACACCACCCT AAATGCTATC CTGGATTTAA TCGTCGAGGG AACATGGGAC TGGAACGGTG AGACAGGCCA TGTAACCCGC AGCCCGGGAT GGTATCGCAT GCTTGGCTAT GAGGTAGGGA TATTTCTGGA GAATGTGTTT ACCTGGGAAA ATATTATTCA CCCCGATGAC TACAAGAGAG TCATGACCCA CTTCGAACAA TATATAAACG GGCAGTCTAC TCAATACCTT ATCGAATACC GCTGCAAAAA GTCTGATGGA AGCTACCTAT GGATAATCGA CCGGGCTAAG ATACAGGCTT ATAAAGCCGA TGGTACCGTC GCCAGAATGA TTGGCGCACA CCACAATATT CATAATAAAA AGTTAGCTCA AGATGAAGTT AGTAAACTCA ATAAGCTCCT TCAGCAAGGT AATATGTCAC TGGACAACCT GATAAAGATA AACGCAAAAG AGTTGGAGAA GAAAAACCAG GAACTCGAAG AGAAGATTAA AGAGGTCGCG CTCCTCTCCA ATATTGACCC ACTCACCTCT ATCGCTAACC GAAGAAGCTT TGAAAAAGAG TTACAAAAAG AGGTATTACG CTCAAGAAGA TACAATCATC CCCTCTCCTT AACCATTTTT GATATAGATC TATTCAAAAA TGTAAACGAC ACCTATGGGC ACAAGAAAGG CGACGATATC CTGCAAAAAT TGTGTAAGCT GGTATCCACT AATATCAGAG AACTCGATTT TTTTGCCCGC TGGGGAGGCG AAGAATTTGT CCTCATATTT CCTGAGTTAA CACTCAAGCA AGCACTCGTC GTAACCGAGA AGCTCAGAAC AACCATCAGC CAGTATGAGA TTGAGCCCGA TCTCTATATT ACCTGTAGTT TCGGAGTCAC CGAGTGCAAA GATGAAGACT CAATAGAGGA TATATTTCAG CGCATCGATA ACTCACTGTA TCAAGCCAAA AGCAATGGCC GCAACCGAAT CGAGAGCCTG TAA
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Protein sequence | MNDTYKHSEV TESDTTLNAI LDLIVEGTWD WNGETGHVTR SPGWYRMLGY EVGIFLENVF TWENIIHPDD YKRVMTHFEQ YINGQSTQYL IEYRCKKSDG SYLWIIDRAK IQAYKADGTV ARMIGAHHNI HNKKLAQDEV SKLNKLLQQG NMSLDNLIKI NAKELEKKNQ ELEEKIKEVA LLSNIDPLTS IANRRSFEKE LQKEVLRSRR YNHPLSLTIF DIDLFKNVND TYGHKKGDDI LQKLCKLVST NIRELDFFAR WGGEEFVLIF PELTLKQALV VTEKLRTTIS QYEIEPDLYI TCSFGVTECK DEDSIEDIFQ RIDNSLYQAK SNGRNRIESL
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