Gene Ssed_1148 details

Gene Information

• Locus tag: Ssed_1148
• Symbol: rnc
• ID: 5610297
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella sediminis HAW-EB3
• Kingdom: Bacteria
• Replicon accession: NC_009831
• Strand: +
• Start bp: 1368592
• End bp: 1369269
• Gene Length: 678 bp
• Protein Length: 225 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 640931997
• Product: ribonuclease III
• Protein accession: YP_001472887
• Protein GI: 157374287
• COG category: [K] Transcription
• COG ID: [COG0571] dsRNA-specific ribonuclease
• TIGRFAM ID: [TIGR02191] ribonuclease III, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.00543431
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 21
• Fosmid unclonability p-value: 0.710949
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGAACCGA TTAAAAACAT GCCTAGATTA TGTCGAACTT TAGGTTATGA GTTCAACGAT 
CAATCGCTAC TCGAGCATGC ATTAACGCAT CGTAGTGCGT CCAGTAAACA TAATGAAAGG 
CTAGAGTTCC TTGGAGACTC TATACTGTCC ATTATCATCT CTGATGCACT GTTTCATCAA 
TTCCCTAAGG CCACTGAGGG CGATCTGAGT CGTATGCGTG CCACACTCGT CTGTGGAAAA 
ATGCTGGCTG AGATCGGTTT CGAGTTTAAA TTAGGCGATT ACCTGAATTT AGGCCCGGGA 
GAGTTGAAAA GCGGTGGGTT TCGACGAGAG TCAATCATTG CCGATGCCGT AGAAGCCATT 
ATAGGCGCCG TCTACATCGA TTCAGGTGTA GAAAAGTGTC GCTGTTTAGT GCTGAGTTGG 
TATGAGTCTC GTCTTGCGAT TATCCAGCCT GTAAACCAGA AAGATCCAAA AACCTTGTTG 
CAGGAGTTGT TGCAAGGTTT TAAAAAACCA CTTCCGGTCT ACAAAGTAAT AGACATTAAA 
GGTGAGGCGC ACGCGCAAAC CTTTACGGTG GAGTGTTATG TTGAAGAGTT AAGCAAGCCG 
GTTATCGGTA TTGCAAGTTC CCGTAGAAAA GCGGAGCAGC TAGCGGCTGC CGACGCTTTG 
GAGTTAATGA AGAGATGA 

 

Protein sequence

MEPIKNMPRL CRTLGYEFND QSLLEHALTH RSASSKHNER LEFLGDSILS IIISDALFHQ 
FPKATEGDLS RMRATLVCGK MLAEIGFEFK LGDYLNLGPG ELKSGGFRRE SIIADAVEAI 
IGAVYIDSGV EKCRCLVLSW YESRLAIIQP VNQKDPKTLL QELLQGFKKP LPVYKVIDIK 
GEAHAQTFTV ECYVEELSKP VIGIASSRRK AEQLAAADAL ELMKR