| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1142 |
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| Symbol | |
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| ID | 5613797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1362918 |
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| End bp | 1363496 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931991 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_001472881 |
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| Protein GI | 157374281 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000720782 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTGGAC AAATAAGTGA TCAACAATTA GTTGAACGTG TACAGCAGGG AGATAAAAAC
GCTTTTAACC TTTTGGTGCA GAAGTATCAA AACAAGGTCA TGAGTTTGAT TGCACGTTAC
GTGCGTAATC AGGCCGACGT TGCTGATGTC GCTCAGGAAG CCTTTATAAA AGCTTACCGA
GCCTTGCCCA ATTTTCGTGG TGAAAGTGCT TTTTATACCT GGTTATACCG AATTGCGGTT
AACACAGCGA AGAATCATTT GGTTGCACAG GGGCGACGCG CACCTGCAAA TGATATCGAT
GCAGAGGAAG CCGAATATTA TGATGGCAGC GACGCCTTAA AGGAGTTTGC ATCTCCGGAG
CGTTTGATGC TGTCGGATGA GATCCAGAAG GTTGTCTTTG ACACCTTGGA CACATTGCCA
GAAGAATTAA AGATGGCTAT TTCGTTGCGA GAGCTCGATG GTATGAGTTA CGAAGAGATA
GCAAACGTCA TGGATTGCCC CGTCGGTACT GTAAGATCTC GGATCTTCAG GGCTCGAGAG
GCGATTGATA AAAAGCTTCA GCCTTTGCTG GAGCAGTAG
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| Protein sequence | MSGQISDQQL VERVQQGDKN AFNLLVQKYQ NKVMSLIARY VRNQADVADV AQEAFIKAYR
ALPNFRGESA FYTWLYRIAV NTAKNHLVAQ GRRAPANDID AEEAEYYDGS DALKEFASPE
RLMLSDEIQK VVFDTLDTLP EELKMAISLR ELDGMSYEEI ANVMDCPVGT VRSRIFRARE
AIDKKLQPLL EQ
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