Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1126 |
Symbol | gltB |
ID | 5612653 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1342273 |
End bp | 1346721 |
Gene Length | 4449 bp |
Protein Length | 1482 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640931975 |
Product | glutamate synthase subunit alpha |
Protein accession | YP_001472865 |
Protein GI | 157374265 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0069] Glutamate synthase domain 2 |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.052618 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCTTAT ATCACCCCAG TTTCGAGCGG GATAATTGCG GTTTTGGTCT GATAGCCCAA ATGGACGGTG AACCAAGCCA TCGAATAGTA AGAACAGCAA TACATGGCCT GGATCGCATG AAGCATCGTG GTGGCATCGC CGCCGATGGG CGTACGGGTG ACGGCTGCGG TCTGCTTATG CAACTTCCGA TAAAATTCTT CGAAGCCATT GCAGCCGAAA ACGATTGGCA CCTGAGCCGT AAATTTGCTG TCGGTATGTT TTTCCTCAGC CAGGATGAGC AACTCGCCAA TGAAGCTAAA CTCTTATTAG AACGAGAATT AGAAAAAGAG ACCCTAAGCG TTGCAGGATG GAGAAAGGTA CCCGTTAATC CCGATGTACT TGGACCGATA GGAAAGAAGA GTCAGCCACA GATTTTTCAG GTACTCATTA ATGCTCCCAT TGGCTGGCGA GAGAAAGATC TCGAACGTCG CCTCTATATG GCCAGACGCC GTTTAGAGCA ACAACTGCCC CATGATAAAG ATTTTTATGT TGCCAGCTTA TCTGGACAGG TCATTGTCTA TAAAGGCTTA ATGATGCCTG TCGACCTCCC CGAATTCTAT CTGGATCTTG CCGATATCAG GCTCCAGAGC TCTATCTGTC TTTTCCATCA AAGATTTTCT ACCAATACAT CACCTAAGTG GCCACTGGCA CAACCCTTCA GATATCTGGC CCATAATGGT GAGATAAACA CAATTACAGG TAACAGACAG TGGGCACGTG CTCGTGCATA TAAGTTTAAC GCCCCTCTAC TGCCCGATCT GCAGCAAGCC GCTCCTTTCG TAAACGAAAC TGGCTCCGAC TCCTCATCAC TCGATAACAT GCTTGAGATG CTGTTGGCCG GCGGCATGGA TCTATATCGA GCCATGCGCC TGTTAATACC ACCAGCATGG CAGAGTAATC CGGAGATGGA TGAAGAGCTC AAAGCCTTCT ACGATTTCAA CTCCATGCAT ATGGAGCCTT GGGACGGACC CGCCGGCATC GTGATGACAA ACGGCAGGCA TGCGGCCTGC GCTGTCGATC GAAATGGTTT GCGCCCATCG CGCTATGTGA TCACCAAAGA CAGAATACTC ACCCTGGCCT CCGAAGTGGG GATCTGGGAT TATGCCCCCG ATGAAGTCGT TGAGAAGGGT CGTGTTGGCC CCGGTGAGCT TCTGGTACTC GACACCCTGA ACGGTCAGCT CTACTCTTCG TTTGAGATTG ATAACGATCT CAAGCGCCGT CACCCATACA AAGAGTGGAT GGCCAAAAAT AGCCGGACGT TAACCCCGGC CGAAGAGATG CCTAATGAGG AGCAGGGAGT ATGTGAATTC ACCGACGCTC AACTGCTGCA ATATCAGAAG CATTTCGGTT ACTCACGTGA AGAGCTCGAG CAAGTTATCT GGGTTCTCGC TCAAAAAGGT GAAGAGGCGA CAGGCTCCAT GGGTGACGAC ACCCCTATGG CCGTGCTGTC TAAGAAGTCC CGTACCATCT ATGACTATTT CAGACAGAAA TTTGCCCAGG TCACTAATCC GCCTATCGAT CCACTCAGAG AGAAACATGT AATGTCTCTC TCGACCTGTG TCGGGCGCGA GCAGAATCTA TTCAATGAGA CTACGGGTCA TGCATATCGG GTTATGTTTA ACTCGCCGGT ATTGCTTTTT AGCGACTTCA ACCAGTTAAT GGCACTGGAC TCGACCTACT ATCGAGCAAA TACAGTAGAT CTTAACTACG ACTTAGACGA AGGGCTTGAA AATGCGGTTA AACGCATCTG TGATGAAGCG GAAAGACTAG CCCGCACAGG CACGACTCTA CTGATATTAT CAGACAGAGC CACGGCAGAT TCTAAGCAAG TAGTCCCTGC GGCCATGGCC GTTGGTGCGG TTCAACATGT TCTGGTCAAT AAGAGCCTGC GCTGCGACAC CAACATCATA GTAGAAACGG CTTCGGCTCG TGACCCTCAT CATTTTGCTG TGTTATTAGG CTTCGGCGCC ACGGCGGTCT ACCCCTATTT GGCCTATGAG TCCATCTCGG CTCTCGCTAA ACTCAATAAT GTCTCACAAA CGAGTCATCT ATTGCTCAAC TTCCGCCATG GTATCGACAA GGGCCTGAGA AAGATCATGT CTAAGATGGG GATCAGCACT GTCGGCTCCT ATCGATGCTG TCAACAATTT GAGGCTATCG GTCTGGCGTC GAATGTGGTC GATTTGTGCT TCAATGGCGT AGTAAGCCGT ATCGAAGGTG CGAGCTTTGA ACTACTCGAA CAAGATCAGG TACTGCTTCA TAAGCACGCA TTCAGGGCGC ATCAACCATT GAGCCAGGGT GGTTTACTGA AATATGTTGA GGGTGGTGAA TACCACTGCT TTAATCCTGA TGTCGTCAAC ACCCTGCAAG CTTGTCTGAA AGAGAGAGAT TATCCGGCCT ATAAACGATT TACCGAGCTG GTCGATAACA GACCCGTTGC GACACTACGA GATCTCATCG AGATAAATGG GAAATTGGAC GCGGTTGAGC TTGATACCGT CGAGTCAGCC GATACGCTCT ATCCCAGATT CGATAGCGCA GCCATGAGTA TTGGTGCACT GAGCCCCGAA GCCCATGAAG CCCTGGCTGT AGCCATGAAC CGCCTGGGAG GCCGCTCCAA TTCAGGCGAA GGCGGAGAAG ACCCGGCCCG TTTCAACTCA GAACGAAACT CAGCAATTAA ACAAATCGCA TCAGGCAGAT TCGGCGTTAC CGCTCACTAT CTGATGAACG CCGAAGTTCT GCAGATTAAG GTGGCACAAG GCGCTAAGCC TGGAGAGGGC GGACAACTTC CCGGACATAA GGTCAGCGTT GAAATTGCAG CGCTGCGTAA TGCCCGTCCC GGAGTCACGC TGATTTCGCC GCCTCCACAT CATGATATCT ATTCGATTGA AGATCTGGCG CAGCTTATCT TCGATCTCAA ACAGATTAAC CCCAAGGCAC TCATCTCGGT CAAACTGGTA TCTGAACCGG GGGTCGGCAC CATAGCAACC GGTGTAGCCA AGGCTTATGC CGATATGATT ACCATCTCAG GTTATGATGG TGGTACAGGT GCCAGCCCGA TTACATCGGT TAAATATGCC GGTAGCCCGT GGGAGCTGGG CCTTGCAGAG GTTCATCAAT CTCTGGTTAA AAATGGCCTT CGCCATAAGA TCCGACTTCA GGTCGATGGC GGATTAAAAA CCGGTCAAGA CGTGATCAAG GCTGCGCTGT TAGGAGCGGA AAGCTTTGGT TTCGGTACGG TTCCGATGAT AGCGCTGGGT TGTAAGTACC TGCGAATTTG TCACCTGAAC AACTGTGCAA CCGGTGTGGC AACTCAAAAT GAAAAGCTTA GAAATGAGCA CTATCATGGT CTGCCCGAGC GCGTCATGAC CTACTTCGAG TTCGTTGCCG AAGAGATCAG AGAGTGGATG GCCGCACTGG GTGTGACACA ATTTGAAGAT CTCGTGGGTC GAAGCGAATG GTTAGCGGCA CTCGATGGCG ATACCCTTAA ACAACAGGGA CTGGATCTCA GCCCGATCTT ATACACTCCG AAAATCCGAG AGGGTTCGGC TCGTACCTGG CAGGAGATAA ACCCGCCATC GGATCCTGGC AAATTAAACA TCAAGATCCT TGAAAAAACC AGAGAGGCTG TAGAACAGGG GCTCTCTATT GATGCAAGGT TTGATATCAA CAACACTGAC CGCTCGGTTG GCGCAGCACT TTCAGGCTTT ATCGCGAAAA CAGTGGGCAA GGAGGGTGCT AAGGCTCCCA TCAAGCTGAA GTTTAATGGG AGCGCCGGAC AAAGCTTCGG TGTATGGAAC AGCCCCGGCC TCGAGCTTAC CCTCTGTGGT GATGGCAACG ACTATGTCGG TAAAGGCATG TCTGGCGGTA AGATCACCAT CCATCCTCCA TTGGGCAGCA CCTTCCAGAG CGAACGCTCC TCCATTATCG GCAATACCTG CCTCTACGGA GCATCGGGCG GTAAGATGTT CGCAGCCGGC ATCGCCGGTG AACGCTTCGG AGTAAGAAAC TCGGGAGCAA CAGCAGTTGT TGAAGGACTC GGCGACAACG GTTGTGAATA TATGACCGGT GGTATTGTCC TCGTTCTGGG TAAAACCGGC GTTAACTTTG GTGCAGGTAT GACTGGTGGT TTTGCCTATG TGTTTGACCG ATTCGGACGA TTCAATCGCC GGGTCAATAC TGAACTGGTG GATACTCAGA AGTTAGAGTC CCCCATACAT CAGCAGCACC TGAAAGCCTT GATCGAGGAG CATGTTGCCG AAACCGGCAG TGAACACGCC AAGATGCTGT TAACCGATTT TGAATATTGG CTCGACTGCT TCGTATTGGT CAAACCTAAA AGCGTTCCAG TCTCAGATCT ACTAAGGCTC GAGCAATCAC AACCTGAACT CAAAGTGATA GCGGGGTAA
|
Protein sequence | MSLYHPSFER DNCGFGLIAQ MDGEPSHRIV RTAIHGLDRM KHRGGIAADG RTGDGCGLLM QLPIKFFEAI AAENDWHLSR KFAVGMFFLS QDEQLANEAK LLLERELEKE TLSVAGWRKV PVNPDVLGPI GKKSQPQIFQ VLINAPIGWR EKDLERRLYM ARRRLEQQLP HDKDFYVASL SGQVIVYKGL MMPVDLPEFY LDLADIRLQS SICLFHQRFS TNTSPKWPLA QPFRYLAHNG EINTITGNRQ WARARAYKFN APLLPDLQQA APFVNETGSD SSSLDNMLEM LLAGGMDLYR AMRLLIPPAW QSNPEMDEEL KAFYDFNSMH MEPWDGPAGI VMTNGRHAAC AVDRNGLRPS RYVITKDRIL TLASEVGIWD YAPDEVVEKG RVGPGELLVL DTLNGQLYSS FEIDNDLKRR HPYKEWMAKN SRTLTPAEEM PNEEQGVCEF TDAQLLQYQK HFGYSREELE QVIWVLAQKG EEATGSMGDD TPMAVLSKKS RTIYDYFRQK FAQVTNPPID PLREKHVMSL STCVGREQNL FNETTGHAYR VMFNSPVLLF SDFNQLMALD STYYRANTVD LNYDLDEGLE NAVKRICDEA ERLARTGTTL LILSDRATAD SKQVVPAAMA VGAVQHVLVN KSLRCDTNII VETASARDPH HFAVLLGFGA TAVYPYLAYE SISALAKLNN VSQTSHLLLN FRHGIDKGLR KIMSKMGIST VGSYRCCQQF EAIGLASNVV DLCFNGVVSR IEGASFELLE QDQVLLHKHA FRAHQPLSQG GLLKYVEGGE YHCFNPDVVN TLQACLKERD YPAYKRFTEL VDNRPVATLR DLIEINGKLD AVELDTVESA DTLYPRFDSA AMSIGALSPE AHEALAVAMN RLGGRSNSGE GGEDPARFNS ERNSAIKQIA SGRFGVTAHY LMNAEVLQIK VAQGAKPGEG GQLPGHKVSV EIAALRNARP GVTLISPPPH HDIYSIEDLA QLIFDLKQIN PKALISVKLV SEPGVGTIAT GVAKAYADMI TISGYDGGTG ASPITSVKYA GSPWELGLAE VHQSLVKNGL RHKIRLQVDG GLKTGQDVIK AALLGAESFG FGTVPMIALG CKYLRICHLN NCATGVATQN EKLRNEHYHG LPERVMTYFE FVAEEIREWM AALGVTQFED LVGRSEWLAA LDGDTLKQQG LDLSPILYTP KIREGSARTW QEINPPSDPG KLNIKILEKT REAVEQGLSI DARFDINNTD RSVGAALSGF IAKTVGKEGA KAPIKLKFNG SAGQSFGVWN SPGLELTLCG DGNDYVGKGM SGGKITIHPP LGSTFQSERS SIIGNTCLYG ASGGKMFAAG IAGERFGVRN SGATAVVEGL GDNGCEYMTG GIVLVLGKTG VNFGAGMTGG FAYVFDRFGR FNRRVNTELV DTQKLESPIH QQHLKALIEE HVAETGSEHA KMLLTDFEYW LDCFVLVKPK SVPVSDLLRL EQSQPELKVI AG
|
| |