| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1104 |
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| Symbol | |
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| ID | 5612149 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1313930 |
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| End bp | 1315126 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931953 |
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| Product | tyrosyl-tRNA synthetase |
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| Protein accession | YP_001472843 |
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| Protein GI | 157374243 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0162] Tyrosyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00234] tyrosyl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.358597 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGATT TAGACCAAGC ATTAGCAGAA ATTAAACGTG GTACCGATGA GATTTTACTC
GAAGCGGATC TGCTGGAAAA ATTAAAAGAG GGACGTCCCT TACGTATCAA GCTTGGAGCC
GATCCTACCG CGCCTGATAT TCATTTAGGT CATACCGTTA TCTTAAATAA GATGCGTACC
TTTCAGGAGC TGGGTCATGA AGTTATCTTC TTGATCGGTG ACTTTACCGG TATGGTCGGT
GACCCAAGCG GTAAGAACAG TACTCGTCCT CCTTTGACGC GCGAGCAAGT GTTGGCCAAT
GCTGAAACCT ATAAGCAGCA GGTTTACAAA ATCTTAGACC CGGCTAAGAC TCGTATCGAG
TTTAACTCCA GCTGGCTTGA GCCTCTGGGC GCCGCCGGTA TGATCCGTTT GGCATCGAAG
CAGACCGTTG CTCGTATGAT GGAGCGTGAC GACTTTAAGA AGCGTTATGG CTCGGGTCAG
TCTATCGCGA TTCACGAATT CATGTATCCA CTGCTACAGG GTTATGACTC GGTGGCACTC
AAGTCGGATG TTGAGCTCGG CGGTACCGAT CAGAAGTTTA ACCTGCTGAT GGGCCGTGAG
CTGCAAAAGT CGGAAGGTCA GAAGCCACAA ACGGTTATCA TGATGCCATT GCTTGAAGGC
CTCGATGGCG TGAAGAAGAT GTCTAAGTCT GCGCACAATT ATATTGGTGT GAGTGAGCCT
GCCGGTGAGA TGTTTGGCAA GATAATGTCC ATCTCTGATG AGTTGATGTG GCGCTACTTC
GAGCTATTAT CATTCCGTCC ACTGGGTGAA ATAGAGCAGT TCAAGGCCGA TGTAGACGCC
GGTGCTAACC CACGTGACAT CAAGATTGCG CTAGCCAAGG AGATCATTGC ACGCTTCCAT
GATGAAGCCG CTGCCGATGC TGCTCATCAG GAGTTTATCA ATCGCTTCCA AAAAGGCGCC
ATCCCTACCG ATATTCAAGA GTTAGAGATC GCAGCCGGTG AAGGGATAGC TATCGCTAAC
CTGCTTAAAG AAGCGGGTCT TGTAAACTCG ACCTCAGATG CGATGCGCAT GATCAAGCAA
GGTGCCGCCA AGATTGATGG CACTAAGATT GAAGATACAC GTCTTCAGCT AAGCGCCGGG
ACTACGGGTG TGTTCCAGGT GGGTAAGCGC AAGTTTGCTA AGATCACTCT GGTATAA
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| Protein sequence | MADLDQALAE IKRGTDEILL EADLLEKLKE GRPLRIKLGA DPTAPDIHLG HTVILNKMRT
FQELGHEVIF LIGDFTGMVG DPSGKNSTRP PLTREQVLAN AETYKQQVYK ILDPAKTRIE
FNSSWLEPLG AAGMIRLASK QTVARMMERD DFKKRYGSGQ SIAIHEFMYP LLQGYDSVAL
KSDVELGGTD QKFNLLMGRE LQKSEGQKPQ TVIMMPLLEG LDGVKKMSKS AHNYIGVSEP
AGEMFGKIMS ISDELMWRYF ELLSFRPLGE IEQFKADVDA GANPRDIKIA LAKEIIARFH
DEAAADAAHQ EFINRFQKGA IPTDIQELEI AAGEGIAIAN LLKEAGLVNS TSDAMRMIKQ
GAAKIDGTKI EDTRLQLSAG TTGVFQVGKR KFAKITLV
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