Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1101 |
Symbol | |
ID | 5612103 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1308533 |
End bp | 1310674 |
Gene Length | 2142 bp |
Protein Length | 713 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640931950 |
Product | transcriptional regulator domain-containing protein |
Protein accession | YP_001472840 |
Protein GI | 157374240 |
COG category | [K] Transcription |
COG ID | [COG3710] DNA-binding winged-HTH domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000631181 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00725129 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATAAAGA TAAGAAAAGA GGCTGTATTT AAGTTGGAAG GCTGTGAAGT CATGCCCGGT GAGAATAGTC TTAACTTCTG TGAGCCCGTT CCGGATAGCG TGACTCCGGG AAAGGTCTCT ATTCAGCCCA AATTTATCGA GTTGCTGAGT TATCTTGCAA GAAAATATCC AAATGTCGTA ACCCGCGATG AGCTTATCGA CAACATCTGG GAAGGGAATA CCTATGTCGG TGCGAAGGCG TTAACGAATG CTATCTGGCA TCTGAGAAAA CATCTCAACC CTCTGCTTAG CGGCGAGCAA GCGATAGAAA CCGTCAGAAA AACCGGTTAT CGATTATTGA TTGAACCTCT GTTTGATGCC TCGGACTTGG TAGATGAACC CGAAATATTA CAAGTCGAGC AGGCTAAGGT TGAGCGCTTA AGTAAGCAGT TACGCTTGAG GTCGTATGCC ATGCTTGTAA TCCTGCTCGT TGTGGGTGTG TTCGCCGGTT TGCATCTGTA TCAGGACAGT AAGCAATTGC GTCAAACTGA AATGGTACAA TTGACGCGGG CTGCGGGGGC TGAGTTGTAT CCGGCTGTTT CGCCCGACGG ACGTTGGTTG GTTTATGGTA AGCGGTCTAA TTTGTACCTC AAGGATTTAG AGTCGCCGAC CCTGACACCC AAGCGACTGA CATCGAAACG GACCCGTGAA CTCAGGGCTA TCTGGTCGTC TGATGGTAAA TCACTGATAT ATCCCAGTGA AGACAGAGTT ACCCGCGAAT GCCATATGAA TCGCCTTATG TTAGAGACGA ATGAAGTGAG CTATCTATCT GAGTGTTACA GTTATACCTC TGCGTTAGAT ATCTCTGCCG ATGGTCGTTC GCTTATCTAT ATATGGAAAG AGAAGGAGAG GGAGGAGCTT GATGCGGGCC TCTACCTGCT CGATCTCTTA TCCGCAGAAC TTGCTCCGCT GAGACTATCA TGTGAGCGTG ATTGTGGTTA CAGGGACAGA GATGTTGCCT TCAGTCCCGA TGGGAAGTGG ATTGCTATAG CGAGGCGATA TGGCACGATT TCTGAGGATA TTTTTATACG GAACATTGTA ACCGGCGATG AGGTTCGTCT GACTCAAGGT TTAGAGGATA TTCGTGGTTT GAGCTGGGAT CAGGATAGTC AGAAGCTGGT TTTCAGTACT GAAAACTCAG GATTCAGGGA TGGTTTTATT GTCGATATTG AGTCGAAAGA GATGTTGCCG CTGTCGATCT CAGGGTTCAG TTACCCAAAA TTTATTCCCC ATAGAGATGA GGTGGTCTAT TCCAACTATA TCAAAGATTT TAGTGTTGCT TATTTGGCTC TGGACCAGGA CATTCCCTCG ACGGTTTTTC CAATATCCCA AGCGGAGTAT AGTTACCGTA ACCCCGATTA CTCATCGAAA GCCAAACGTA TCGCCTATGT GTCCAACGAG ACCGGGTTCA ATGAGATATG GACGTCAGAT CATAATGGAT TAAACAGAGT ACAACTTACC GATCTTAAGC GGAGGGTCGC CTATCCGGCA TGGTCCCATG ATGGTAGCAA AATTGCGTTC CTGGCTCCGG ACGATAAAAA TGAAGGGAAT AAGATCCATA TTGTAGACCT CTCCAGCGGC GGGATCAGCA TATTACCTTC GAGGTCTTCA GATCATAGAA GACCGAGCTG GGCATGGGGA GATGAATGGG TGCTATCATC GACCAATGAT GGCTTAACCG CCTTCTCACT GCACAACCAT TCCCCCAAGC ATCTGAGCTC TATCGATGTA CGTTTAGGTA AGATGACCGA TGCAAATACC TTAGTATTTA CCCGCTATGA TGAATATGGC CTCTGGTCTA TGGATATTTC GAATCCACAA CAAGTGGAGC CCTTAATTGC TATAGAGGAC TTTAGCGAGA GTTACAACTG GGTAGTGACT GACAAAGGGG TCTATTTTCG TGAGGTCAAC GCAGGGTATC AGCTGATAAA TTTCTGGAGC TTTAATACCG ATCTCACCAC GCCTATTTTA AAATTGCCCG CGAGCAGTTT GAGCTCTTTT GGGGCCATGA GCTATATTCC CGGCGAAAGA CGCCTGCTGA TGACCCTGTC TGAGTATTCG AAGCGTGATG TGATTAAACT TAAACATAAA CTATTGCATT GA
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Protein sequence | MIKIRKEAVF KLEGCEVMPG ENSLNFCEPV PDSVTPGKVS IQPKFIELLS YLARKYPNVV TRDELIDNIW EGNTYVGAKA LTNAIWHLRK HLNPLLSGEQ AIETVRKTGY RLLIEPLFDA SDLVDEPEIL QVEQAKVERL SKQLRLRSYA MLVILLVVGV FAGLHLYQDS KQLRQTEMVQ LTRAAGAELY PAVSPDGRWL VYGKRSNLYL KDLESPTLTP KRLTSKRTRE LRAIWSSDGK SLIYPSEDRV TRECHMNRLM LETNEVSYLS ECYSYTSALD ISADGRSLIY IWKEKEREEL DAGLYLLDLL SAELAPLRLS CERDCGYRDR DVAFSPDGKW IAIARRYGTI SEDIFIRNIV TGDEVRLTQG LEDIRGLSWD QDSQKLVFST ENSGFRDGFI VDIESKEMLP LSISGFSYPK FIPHRDEVVY SNYIKDFSVA YLALDQDIPS TVFPISQAEY SYRNPDYSSK AKRIAYVSNE TGFNEIWTSD HNGLNRVQLT DLKRRVAYPA WSHDGSKIAF LAPDDKNEGN KIHIVDLSSG GISILPSRSS DHRRPSWAWG DEWVLSSTND GLTAFSLHNH SPKHLSSIDV RLGKMTDANT LVFTRYDEYG LWSMDISNPQ QVEPLIAIED FSESYNWVVT DKGVYFREVN AGYQLINFWS FNTDLTTPIL KLPASSLSSF GAMSYIPGER RLLMTLSEYS KRDVIKLKHK LLH
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