| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1089 |
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| Symbol | |
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| ID | 5612423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1291868 |
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| End bp | 1292887 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931938 |
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| Product | aspartate carbamoyltransferase |
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| Protein accession | YP_001472828 |
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| Protein GI | 157374228 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0540] Aspartate carbamoyltransferase, catalytic chain |
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| TIGRFAM ID | [TIGR00670] aspartate carbamoyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0175924 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCAGT TTCAAGGATC ACATATCCTC TCGGTAAACC AGCTTAACCT GGATGCCGTC
CAACAGATAT TCAATGTTGC CGCCCGCATG GCCCCCTATG CTTTAAGACA GAAACGTACA
ACTGTCCTCG AAGGCGCGAT TTTAGGTAAC CTTTTTTTCG AGCCCAGCAC ACGAACGCGT
ATCAGTTTCG GCTGCGCCTT TAACTTGCTC GGTGGAAAGG TTAACGAAAC CGTTGGTATG
GCCTCTTCAT CACTGTCTAA GGGGGAATCC CTCTATGACA CGGCGAGAGT GCTATCGAGT
TACTCGGATG TAATCGCCAT GCGTCACCCT GAAGCGTTCT CGGTCAGAGA GTTCTCTGAA
GGCAGCCGGG TCCCGGTTAT CAATGGGGGG GACGGCTCTA ACGAGCATCC GACCCAAGCT
CTGCTCGATC TGTTTACCAT TCAAAAAGAG CTCGCCACAC GCGGCCAGGA TATCAGTGGA
ATGCATATCG CCATGGTGGG AGACCTGAAA TTCGGCCGTA CGGTTCACTC GCTCTCTCGT
CTGCTATGTA TGTATAAAAA CGTAAGTTTT ACACTGGTTT CACCGAAAGA GTTAGCAATG
CCTGACTATG TGATCAGTGA CATTGAAAAT GCTGGGCATA AGATCACAAT AACAGACCAA
CTTGAAGGCA ATTTAGATCA GGCTGATATA CTCTACCTGA CTCGCATTCA AGAAGAGCGT
TTTCCTTCAC AAGAAGAAGC GAACAAGTAT CGCGGTAAGT TTCGTCTTAA TCGCAATATT
TACACAAAGC ATTGCAAGTC AAACACTGTG ATCATGCATC CGCTACCTAG AGACTCGCGC
AAGCAGGCCA ACGAACTGGA CAATGACCTT AATAGTCATC CTAATTTGGC CATCTTTAGA
CAGGCAGATA ACGGACTCCT GATCCGCATG GCACTGTTTG CCCTGACACT CGGCGTTGAT
GCGCAACTCG AAAAATATGA GTGTCCGGTT AATTGGTATT CACGAAAAGC CGACTTTTAA
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| Protein sequence | MTQFQGSHIL SVNQLNLDAV QQIFNVAARM APYALRQKRT TVLEGAILGN LFFEPSTRTR
ISFGCAFNLL GGKVNETVGM ASSSLSKGES LYDTARVLSS YSDVIAMRHP EAFSVREFSE
GSRVPVINGG DGSNEHPTQA LLDLFTIQKE LATRGQDISG MHIAMVGDLK FGRTVHSLSR
LLCMYKNVSF TLVSPKELAM PDYVISDIEN AGHKITITDQ LEGNLDQADI LYLTRIQEER
FPSQEEANKY RGKFRLNRNI YTKHCKSNTV IMHPLPRDSR KQANELDNDL NSHPNLAIFR
QADNGLLIRM ALFALTLGVD AQLEKYECPV NWYSRKADF
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