Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1083 |
Symbol | |
ID | 5612601 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1284101 |
End bp | 1284367 |
Gene Length | 267 bp |
Protein Length | 88 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640931932 |
Product | major outer membrane lipoprotein, putative |
Protein accession | YP_001472822 |
Protein GI | 157374222 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000293694 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0136333 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAAAA AAGTACTCAT GATTGCTGGT GTAGCAATGA CTGCCCTTCT AGGTGGCTGT GCAAACACTA CTGCTCTTGA AGAAAGCGTA GCTAACCTTG GCAACAAAGT TGACCAACTA TCATCTGAAG TTAGCTCTCT GAAGTCAGAG CAAGGTGCTC TTTCTGCAGA CGTTAAAGAT GCAAAAGCAG CTGCTATGGA CGCACAAGCA GAAGCTAAGC GCGCAAATGA TCGTCTTGAC AACGTTGCCT CTTCTTACAA GAAGTAA
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Protein sequence | MNKKVLMIAG VAMTALLGGC ANTTALEESV ANLGNKVDQL SSEVSSLKSE QGALSADVKD AKAAAMDAQA EAKRANDRLD NVASSYKK
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