| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1082 |
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| Symbol | |
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| ID | 5612902 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1282834 |
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| End bp | 1283835 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931931 |
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| Product | ErfK/YbiS/YcfS/YnhG family protein |
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| Protein accession | YP_001472821 |
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| Protein GI | 157374221 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1376] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000431634 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0168034 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCGAG TAATGATGTG GTTCATCTTA AGCTTAATTC CTGCCGTGAC CCTGGCTAAT
GTGTATCCAC TGCCAGAGAA GGGAAGCCGT CTTATCGGTG AAGTCCAGGA ACATGTGGTA
GCGCAGGGCG ACTATTTTCA AACCATAGCG AAAGAATACA ATATAGGTAT TCTTGAGTTG
ATGGAGACGA ACCCGGGTGT CGATCCGTTT CTTCCTACTG TGGGCTCAAA GCTTGTCATC
CCAACTCAGA TGTTGCTTCC CGATGTTCCC AGAAAAGGGA TAGTGATTAA CCTGCCAGAA
CTTCGCCTCT ATTATTTTCC GACAAATGGT AAAGAGGTGC ATGTTTTCCC TGTGGGGATT
GGGCGTGTCG GTCGTGAAAC CCCGGAGATG GTGACTAAGA TTAAGTCGAG GATCCCTAAC
CCTAGCTGGA CGCCACCGGC AAGTATACGT CGTGACCATC TCGCAGAGCG TGGCGAGGTG
CTACCGCGCG TCGTGCCTGC CGGACCCGAC AATCCATTAG GTAAATATGC TATGCAGCTT
TCTCATGGAG ACGGCAGTTA CCTCATTCAT GGTACCAATA AAGATTTTGG TGTCGGCATG
CGTGTGAGCT CCGGTTGTGT CCGTTTGAAC CCTGACGATA TCGAATGGTT GTTCCATCAG
GCTAAATACG GTGATTCGGT GAGAGTGATC AATGAAACCG TTAAGATCTC CTCTGAGCCT
GATGGCAGTC AGATCATCGA GGTGCATTCC GCTCTGTCTA AATCTGAGTC AGATGTCGAG
CGGGAGAAGG TCGTTTCAAT GAAGGCCGGA GTAGTAAAAT TTATCAGCCA GGAAGGGATT
GATAGCTTTA AGGCTAATGA TGCGCTATTG ACTCAAAACG GGTTGCCGGT GAATATCCGC
ACAATGGATG ATTCAGACAG TATCACACTA TCCTCGGGCA TTGAGTCTGC GGCAAGTTCT
GAATCTGTAA CAAATGAGAG TGAGCCCTCA GCCAGCTTAT AG
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| Protein sequence | MMRVMMWFIL SLIPAVTLAN VYPLPEKGSR LIGEVQEHVV AQGDYFQTIA KEYNIGILEL
METNPGVDPF LPTVGSKLVI PTQMLLPDVP RKGIVINLPE LRLYYFPTNG KEVHVFPVGI
GRVGRETPEM VTKIKSRIPN PSWTPPASIR RDHLAERGEV LPRVVPAGPD NPLGKYAMQL
SHGDGSYLIH GTNKDFGVGM RVSSGCVRLN PDDIEWLFHQ AKYGDSVRVI NETVKISSEP
DGSQIIEVHS ALSKSESDVE REKVVSMKAG VVKFISQEGI DSFKANDALL TQNGLPVNIR
TMDDSDSITL SSGIESAASS ESVTNESEPS ASL
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