| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1068 |
|---|
| Symbol | |
|---|
| ID | 5613041 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 1267500 |
|---|
| End bp | 1269329 |
|---|
| Gene Length | 1830 bp |
|---|
| Protein Length | 609 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640931916 |
|---|
| Product | 2-ketoglutarate: NADP oxidoreductase, alpha subunit |
|---|
| Protein accession | YP_001472807 |
|---|
| Protein GI | 157374207 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0674] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit
[COG1014] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGAT GTGAATCAAT TAACGAATTT GTGGTGCGCT TTGCCAACAC TAATGGCACA
GGATCTGCCA GCGCTAACAA CATGTTCGCC AAGGCCATCA TGCGAATGGG GCTTCCGGTA
AGTGCTAAGA ATATCTTCCC ATCTAACATT CAAGGTATGC CCACCTGGTT CGAGGTTAGG
ATCAGTGAGA AAGGCTATCT GGGGCGTCGC GGCGGCGCGC CAGAGATGGT GGTGGCCATG
AATGCTCAGA CCCTGAGTGA AGATATCGAC TCGGTGCGCG CCGGTGGTTA TCTGCTGTAT
GACTCAAGTA GCATGTTACC TCAGCGTCTG GAGCGAGAGG ATATTACCTT CTTGGGGATG
CCAATCTCCG AGATCTGCCG CACCGAGTAC AGCGATCAAC GGCAGCGACA GCTCTTTAAG
AATGTGATCT ACGTAGGCGC TATGGCTGCT CTATTGGGCC TCGACTTTCA GGTGCTCAGG
CAGTTGGTGT CGGAACAGTT TAAGGGAAAA GATAAGCTTA TCCGTCCAAA CCTGTATGCC
CTGGAGCTTG GTTTTCAATT TGCGGCTAAA CAGTTTAGTT GTCCGTTAGC CATACACCTC
GAACGCAGGG AGCTGGTGGG CGACAAAATT ATGGTCGACG GTAACACGGC CTGCGCTCTG
GGGGCGGTTT ATGGCGGTGC CACTGTTGTT GGTTGGTATC CCATCACCCC CTCTACCTCT
GTTATCGAGA AGTTTTCCTC ATATTGCCAG CGCTTGCGCA TCGACCCTGC CAGCGGTCAA
AAAAATTACG CCATAGTACA AGCAGAAGAT GAAACCGCGG CCATCGGAGT TGCCTTGGGA
GCCGGTTGGA ATGGGGCAAG GGCATTCACC GCCACCAGTG GCCCCGGGAT CTCACTGATG
ACCGAGTTTT TAGGGTTGGC CTATTTTGCC GAAGTCCCTC TGGTGCTTAT CGATGTACAG
AGGGCTGGAC CTTCGACCGG CATGCCGACC CGTACCCAGC AGTCAGATAT GTTGACCTGT
GCCTATGCCT CTCACGGCGA TAGTAAGCAG GTACTCTTAA TCCCATCGTC GCCATATGAA
TGTTTCGAGT TTAGCGCACT GGCATTCGAT CTCGCCGACA GGCTACAGAC GCCAATCATA
GTGATGACAG ATCTCGATAC CGGCATGAAT CATCATCTGA GTCGTCCCTT CGGGTGGGAT
GATGCTCATA AATACGATCC GGGTAAGGTA CTCGATGCCG GGGCGCTGGA CGAAGTTGCC
GCCTTCGCTC GTTACGCCGA CATCGATGGC GATGGGATCT GCTATCGCAC CCTGCCGGGA
ACCCACCCTA AGAAGGGCGC CTTCTTTACC CGAGGTACTT CAAAAAATAA GTTGGCTGGG
TATTCTGAGA AGACTGAAGA TTACACCAAT AATATGGAGC GCCTGGCCCA TAAATTTGCC
ACCGCAGCCA CACTTCTGCC CGAGCCCGTG ATTCAACTTA ATGCTAAGCC TGCATCTGTT
GGGTTAGTTT TCTACGGCTC GACGCTGGAA GCGATTCCTG AAGCTGTAGC GCTGCTAGCC
GAGCAGGGGG TAAAAGCCAA TACCATGCGT GTCAGAGGAT TTCCATTCTG TGCGCAGGTG
CTCGACTTTA TCGATAGTCA TGAGCGGGTG TTTGTTATCG AACAGAACAG AGACGGACAG
CTCAGGACGC TACTATGCAA TGAGTTGATG ATAGACCCGG CGGCTATGAC ACCGGTACTT
CATTACGATG GCTTAGCCAT TACGGGTGAG TTTATTGCCG ATTCTGTGGA GGAACAGTTG
TCGGCGCAAA CCAACCGAGT GGCAGGTTAA
|
|---|
| Protein sequence | MTRCESINEF VVRFANTNGT GSASANNMFA KAIMRMGLPV SAKNIFPSNI QGMPTWFEVR
ISEKGYLGRR GGAPEMVVAM NAQTLSEDID SVRAGGYLLY DSSSMLPQRL EREDITFLGM
PISEICRTEY SDQRQRQLFK NVIYVGAMAA LLGLDFQVLR QLVSEQFKGK DKLIRPNLYA
LELGFQFAAK QFSCPLAIHL ERRELVGDKI MVDGNTACAL GAVYGGATVV GWYPITPSTS
VIEKFSSYCQ RLRIDPASGQ KNYAIVQAED ETAAIGVALG AGWNGARAFT ATSGPGISLM
TEFLGLAYFA EVPLVLIDVQ RAGPSTGMPT RTQQSDMLTC AYASHGDSKQ VLLIPSSPYE
CFEFSALAFD LADRLQTPII VMTDLDTGMN HHLSRPFGWD DAHKYDPGKV LDAGALDEVA
AFARYADIDG DGICYRTLPG THPKKGAFFT RGTSKNKLAG YSEKTEDYTN NMERLAHKFA
TAATLLPEPV IQLNAKPASV GLVFYGSTLE AIPEAVALLA EQGVKANTMR VRGFPFCAQV
LDFIDSHERV FVIEQNRDGQ LRTLLCNELM IDPAAMTPVL HYDGLAITGE FIADSVEEQL
SAQTNRVAG
|
|---|
| |