Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1065 |
Symbol | |
ID | 5613177 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1261914 |
End bp | 1263200 |
Gene Length | 1287 bp |
Protein Length | 428 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640931913 |
Product | FAD dependent oxidoreductase |
Protein accession | YP_001472804 |
Protein GI | 157374204 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAGTG TACCTCACGC AGAATCCTAT TATGCAGCTT CAGCAAACGA TAAAGTTGAA CGTCCTCAAT TGGCAGACAA TGTTGAGGCC GATATTTGTA TCATAGGCGC CGGTTATACC GGGTTATCGA CGGCGATACA CCTGTTGGAG CTTGGCTTTA GTGTCACAGT ACTGGAAGCC GCGCGTATTG GTTGGGGCGC ATCGGGCCGC AACGGTGGTC AGATAGTGAA TAGCTTCAGT CGTGATATTG ACTCGATTGA AAAAACCGTA GGTAAAGAGA GCGGCAAGTT GTTTGGCGAG ATGGCATTTG AAGGCTCGCG CATCATCAAA GAATTGATCC ACAAGTATAA TATTCAGTGC GATCTTAAAG AAGGTGGTGT ATTTGCTGCG ATAAACCCCA AGCAGATGGG CCATCTCGAG GCGCAAAAAG CGCTGTGGGA GAAGCACGGC CATATGGGGC ATCTCGAGCT ACTCGATGGG AAAGGGATCC GTTCCGTCGT CGACTCTGAG CGCTATGTCG GTGGACTGCT CGACAAGAGT GGCGGACATA TTCACCCACT CAATCTCGCC TTAGGGGAGG CTCATGCGGT CGAGTCATTG GGCGGCAAGA TATTTGAAGA CTCGGCGGTG ATTAAGGTCG AGCAGGGGGA TAACCCGGTC GTACACACGG CTAAAGGTTC GGTAAAAGCT AAGTTTGTGG TGGTGGCTGG TAATGCCTAC CTCAATGGCC TGATGCCACA ACTGCAGGCT AAGTCTATGC CTTGTGGCAC ACAGGTGGTG ACCACTGAGC CGCTCAGTGA TGAATTGGCG GCGAGCTTGT TACCTCAGGA TTATTGTGTC GAGGATTGTA ACTATCTGCT CGATTATTTC AGGCTGTCGG GTGATAAGCG CCTCATCTAT GGTGGTGGGG TGGTATACGG TGCGCGGGAT CCTGCCGATA TAGAAGCCAT AATCCGCCCT AAGATGTTGG AGACCTTCCC TCAACTTAAA GATGTGAAGA TAGATTACAC CTGGACGGGG AATTTCCTGC TGACCCTGTC ACGCCTGCCA CAGGTGGGTC GTATTGGTGA TAACGTCTAC TATTCACAGG GCTGCAGCGG ACATGGCGTG ACCTATACTC ATCTGGCGGG CAAAATATTG GCCGAGGCGA TACATGGACA GGCGACCCGG TTCGATGCCT TTGCCAGCCT GCCTCATTAT CCGTTCCCCG GCGGACATAT GTTCAAGATC CCCTTCAGTG CCATAGGTGC TTGGTACTAC ACCATGAGGG ATAGACTGGG GATCTGA
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Protein sequence | MSSVPHAESY YAASANDKVE RPQLADNVEA DICIIGAGYT GLSTAIHLLE LGFSVTVLEA ARIGWGASGR NGGQIVNSFS RDIDSIEKTV GKESGKLFGE MAFEGSRIIK ELIHKYNIQC DLKEGGVFAA INPKQMGHLE AQKALWEKHG HMGHLELLDG KGIRSVVDSE RYVGGLLDKS GGHIHPLNLA LGEAHAVESL GGKIFEDSAV IKVEQGDNPV VHTAKGSVKA KFVVVAGNAY LNGLMPQLQA KSMPCGTQVV TTEPLSDELA ASLLPQDYCV EDCNYLLDYF RLSGDKRLIY GGGVVYGARD PADIEAIIRP KMLETFPQLK DVKIDYTWTG NFLLTLSRLP QVGRIGDNVY YSQGCSGHGV TYTHLAGKIL AEAIHGQATR FDAFASLPHY PFPGGHMFKI PFSAIGAWYY TMRDRLGI
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