| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1063 |
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| Symbol | |
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| ID | 5613175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1260013 |
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| End bp | 1260918 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931911 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001472802 |
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| Protein GI | 157374202 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAC CATTGAAGTT TAGATTGCCA AAAGGCCAAT GCTGGACGAT AGGAGTGCCC
TATTTCTGGT TATTACTCTT CTTCGCTCTG CCATTCGCTA TCGTTCTGAA AATTAGTTTT
TCGACGGCCG CCATCTCCAT TCCGCCCTAT GAGTCACTGT TCAGTTTCGC CGATGAATCT
CTGCAGATCC TGCTGAACAT AGGTAATTAC CTGCTCATTT TTGATGACAG CCTCTACATC
TATGCTTATC TTGGCTCATT GAAGATGGCC TGTATAACGA CCTTAGGCTG CCTCTTGATT
GGCTATCCTA TGGCTTATGC GATTGCCAGG GCGCCGAAAC AACAGCAAAC CTTGCTGATC
CTCTTAGTGA TGTTGCCCTC CTGGACCTCT TTTCTTATTC GGGTTTACGC CTGGATGGGG
ATCTTGAGCA ATAACGGCTT GATTAATAAT CTGCTGCTCT GGTTGGGGGT TATCTCCGAG
CCGATTCAGA TGCTGAACAC TAATTTTGCG GTCTATATCG GCATCATCTA TAGCTACCTT
CCGTTTATGA TCTTGCCTCT GTATGCCACG CTTTCTCAGC TCGATGGCAG CCTGTTAGAG
GCGGCATCGG ATCTGGGATC GAGAAGTATG AATACGTTTT GGAAGGTCAC CCTTCCCCTG
TCTAAAGGGG GCGTGATTGC CGGTTCTATG TTGGTCTTTA TTCCTGTGGT CGGTGAGTTT
GTTATTCCTG AACTGCTCGG TGGTCCGGAT TCTCTTATGA TAGGTAAGGT GTTATGGCAG
GAGTTCTTCA ATAACCGGGA TTGGCCGGTC GCATCTGCGC TTGCCATCGT GATGTTGGGT
CTGTTGATTA TTCCGATAAC CTTATTTCAC CGTTATCAGT CCAGAAGTAT GGAGAAAGAC
GCATGA
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| Protein sequence | MKKPLKFRLP KGQCWTIGVP YFWLLLFFAL PFAIVLKISF STAAISIPPY ESLFSFADES
LQILLNIGNY LLIFDDSLYI YAYLGSLKMA CITTLGCLLI GYPMAYAIAR APKQQQTLLI
LLVMLPSWTS FLIRVYAWMG ILSNNGLINN LLLWLGVISE PIQMLNTNFA VYIGIIYSYL
PFMILPLYAT LSQLDGSLLE AASDLGSRSM NTFWKVTLPL SKGGVIAGSM LVFIPVVGEF
VIPELLGGPD SLMIGKVLWQ EFFNNRDWPV ASALAIVMLG LLIIPITLFH RYQSRSMEKD
A
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