| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1017 |
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| Symbol | |
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| ID | 5610370 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1211567 |
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| End bp | 1212091 |
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| Gene Length | 525 bp |
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| Protein Length | 174 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931865 |
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| Product | RDD domain-containing protein |
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| Protein accession | YP_001472756 |
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| Protein GI | 157374156 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.113212 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.19318 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAGAAA GCTCAATGCC CAATAGCGAA CATGCTAATT TCCCTCGTGC GAGTTTCTTC
CGTCGTTTCG GCGCCATCGT CTACGATCTA CTGCTCGCCG TTGCCGTTTA CATGATAGCC
GGAGCCATCG GCTTCGGAGT GTTTACCGCC CTCACCTCGG CAGGTCTGAT TGAGATGGGA
GGTTTTGAAC ATGTTTCAGA CCTACTCAAT GGTACACCTC TTTATAAAGG CATCTATCAA
TTCTGGATAG CACTGTGCGT AGGCTTGTTC TACATCGCCT TTTGGAGTCA TGGTGGCCAA
ACTCTAGGCA TGCGCGCCTG GAGACTTAAG GTTCAACATC CTAACGGCCA GAGCCTGAGC
GTTATCACCG CCTCAGCCAG GCTGGTATGG TCTCTGCTAG GCATAGGAAA TCTGTGGATC
CTGATCAACG GAGATAAGCT AGCTCTTCAG GATATGATGA CTCGCTCAGA AGTGGTCGTA
CTGTCGAAGG AAGCCAACCA GATGCGAAAC TGGCATGGGG TTTAA
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| Protein sequence | MKESSMPNSE HANFPRASFF RRFGAIVYDL LLAVAVYMIA GAIGFGVFTA LTSAGLIEMG
GFEHVSDLLN GTPLYKGIYQ FWIALCVGLF YIAFWSHGGQ TLGMRAWRLK VQHPNGQSLS
VITASARLVW SLLGIGNLWI LINGDKLALQ DMMTRSEVVV LSKEANQMRN WHGV
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