| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1007 |
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| Symbol | |
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| ID | 5609984 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1194734 |
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| End bp | 1196455 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931855 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_001472746 |
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| Protein GI | 157374146 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.02936 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGCTT TAATCGCTCA ATCAGGGAAT GGAAGTGCTC AAAGCTCCAT CACATCGGGG
TCTGGCCTTA TGCAGCAGAT AAGGTCAGTT AGGTTTCAAC TCAAGTTAAT TGTATTTCTT
ACGGTTATCT CTTTTATACT TTTGGGGTAT AAGGGGATCA CCGGCATGCA GGATGCGGGA
GACTCTATCG AGAATCTCTA CAGCCAGGGC ATGCAGCACA GTATAAGGGC TGGTAAGGTG
CTCAATGAGC TCGCAAGTGC ACGCAGTGGA CTTTTGCTGG CATTTCAACA CGACCCGAGT
GGCAAATTTT CAGAGATGCA TAATCATCCG CTGGAAAAGC ATATCAAGGA TACCCAAGCC
TCTATCAAGC TGCTGCATCA TATCGTTGAT AATGAGATTT TAAGCTCTCC TCTGGAAGCT
GAGGAACGTG AGCAAATTAA TCGATTAACT GAGCTGCTGG ATAAGGTCAC CATTTCAGGA
TTTGAGCCCG CACTCGATGC GTTAAGAAGG GGAGAGTATG AGGAGTCGAA TCACGTATTA
CTGACTCAAA TTAACCCTCT ATTTAAGAAT ATCACCACAG AAGCGCAGTC ATTTTTGGAT
CTTCAGATCG CCGAAGGGGA AGAGAGTTTT GAACAGTCTC AGGAGAATAT GGCTTCCTTC
ATTCTGTTAG TCGCTATGCT TTCCTGCATC AGTACCCTGA TTATCAGTAT CTGTTCTATT
ATGATTGTCA GACGAGTTAA CCAGTCAGTG ACGCAACTTG AAAATACTGC GGTCGATATC
ACTAATGGCG ATCTGACCAA GCGTATCAAA CTGGGTGGAG ATGATGAGTT TTCACATATT
GCAGAGTTCG TGAATCATAT TACTTCCAGA TTTCAAAGTG CGGTGCTAAA TACCCATGAT
TCGACATCCA GGTTGGCGAG TTCTGCCGAA CAAAACTCTG TGGTTTCGAC TCAGACCCAA
CGAAATGTGA TCGATCAACA ACAGCAGACT CAGCTGATCG CAACGGCTAT TCATCAATTT
ACGGCGACGG TACGTGAGGT GGCTCAGAGT GCAGCTGCCG CTGCAACGAC GTCGGAAGAA
GCGAATACTG CTGCCTGTAA TGGTCAGAGT GTTGTCGATG AGAGCATCAA GGTCATAGAA
ACCCTCTCAC AAGAGATGGA CAGTGCGACC GAGGCGATGA AGCTACTGTC GCAACACTCA
GATGAAATTG GCTCTGTGGT CGATGTTATT CAAGGGATCT CTGAACAGAC TAACCTGTTA
GCACTCAATG CTGCCATCGA GGCTGCTCGC GCCGGTGAGC AGGGGCGAGG CTTTGCGGTC
GTGGCCGATG AGGTTCGTAA TTTAGCTAAG CGTACTCAGG ACTCCACGGA AGAGATCCAG
AAGATGATCC AGCGACTACA GCAAGGTGCT CATGACTCTA TGGTGATGAT GGAACGTGGA
ACCGAGCAGG CGAAATTGAG TGTAGATAAG TCACAGCAAG CCGGTGATGC ACTGCAGAAA
ATTATGGCCA GTATCGAACA GATCAACGCC CTGAATGCAC AGATCGCAAC CGCTTCCGAA
GAGCAGAGCT CGGTTACCGA AGAGATAAAT AAGAACATCA TCAATATCAG TGATATCTCA
GATCAGACGG CAGCAGGGGC CGAGCAGAGC AATGTGGCTA CCCAGGAGTT AGCTAATCTG
GCTGAGTCTA TGCAGCAGGA GATCGCGCAG TATCGGGTGT AG
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| Protein sequence | MSALIAQSGN GSAQSSITSG SGLMQQIRSV RFQLKLIVFL TVISFILLGY KGITGMQDAG
DSIENLYSQG MQHSIRAGKV LNELASARSG LLLAFQHDPS GKFSEMHNHP LEKHIKDTQA
SIKLLHHIVD NEILSSPLEA EEREQINRLT ELLDKVTISG FEPALDALRR GEYEESNHVL
LTQINPLFKN ITTEAQSFLD LQIAEGEESF EQSQENMASF ILLVAMLSCI STLIISICSI
MIVRRVNQSV TQLENTAVDI TNGDLTKRIK LGGDDEFSHI AEFVNHITSR FQSAVLNTHD
STSRLASSAE QNSVVSTQTQ RNVIDQQQQT QLIATAIHQF TATVREVAQS AAAAATTSEE
ANTAACNGQS VVDESIKVIE TLSQEMDSAT EAMKLLSQHS DEIGSVVDVI QGISEQTNLL
ALNAAIEAAR AGEQGRGFAV VADEVRNLAK RTQDSTEEIQ KMIQRLQQGA HDSMVMMERG
TEQAKLSVDK SQQAGDALQK IMASIEQINA LNAQIATASE EQSSVTEEIN KNIINISDIS
DQTAAGAEQS NVATQELANL AESMQQEIAQ YRV
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