| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0972 |
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| Symbol | |
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| ID | 5614233 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1154987 |
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| End bp | 1155958 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931820 |
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| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
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| Protein accession | YP_001472711 |
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| Protein GI | 157374111 |
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| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00515736 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATAG TCGTACTCGA TGGTTATACG TTAAATCCCG GCGATCTTGA CTGGCAACCT
TTGGTGAAGA TTGCCAAACA GGGTCGTGAG GGACAATTTC ACTGTTATGA CAGAACCTCT
GAGGCTGAGC TTATTTCCCG TGCATCGGGT GCTGATATCA TCTTCACCAA TAAAACACCT
ATAACAGCTG AAACTCTATC TCAACTTCCG AACCTTAAAT ACATAGGCGT GTTGGCTACA
GGCACGAATG TGGTCGACCT GAACTGCGCA AGAGAGCGGG GCGTAGCGGT GACTAATGTG
CCCGGCTACG GCCCCGACGC CGTGGCGCAG ATGGTGTTCG CTCATATCTT GCACCATACC
CAGAGAGTGA GTATTCATCA TAGTGCCGTG TCAGAGGGAA AGTGGACTGA CTGTGAAGAC
TTCTGTTTTA CCCTGGCGCC GCTGCAATCC TTGCAGGGGA AAACCTTAGG ATTGATGGGG
TATGGCGCTA TCGGCAGGCA GGTTGCGAAC ATAGCTTTAG CCTTCGGCAT GAAGGTATTA
GTCAATACGC GCACAGAACC CCTCGACTTG CCACCCGGTG TAAAATGGGC TGCTTTCGAT
TCTATGATAC CTCGGGTCGA TATCCTCTCT CTGCATTGTC CCTTGACCGA GGCGACAGAT
AAGATTATCA ACCGCACTGT GCTTGAGAAG ATGCGCTCGA GTGCCATCTT GATCAATACT
GCTCGCGGGG GATTAATCGA TGAGGCAGCG TTGAAACAGG CCTTAGATGA AGGGGAGATC
GCAGCCGCCG GTGTCGATGT GCTCTCGACC GAGCCGCCAC AGGCGGACAA CCCACTGCTT
AACGCCGTCA ATATCAGCAT CAGTCCCCAT AACTCCTGGG CCACACGTGA GGCCAGACAG
AACCTACTGA ATATTGCGAT AGGTAACTTG CAGGCTTTTT TATCCGAAAA GCCCCGAAAT
AGAGTGAATT AA
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| Protein sequence | MNIVVLDGYT LNPGDLDWQP LVKIAKQGRE GQFHCYDRTS EAELISRASG ADIIFTNKTP
ITAETLSQLP NLKYIGVLAT GTNVVDLNCA RERGVAVTNV PGYGPDAVAQ MVFAHILHHT
QRVSIHHSAV SEGKWTDCED FCFTLAPLQS LQGKTLGLMG YGAIGRQVAN IALAFGMKVL
VNTRTEPLDL PPGVKWAAFD SMIPRVDILS LHCPLTEATD KIINRTVLEK MRSSAILINT
ARGGLIDEAA LKQALDEGEI AAAGVDVLST EPPQADNPLL NAVNISISPH NSWATREARQ
NLLNIAIGNL QAFLSEKPRN RVN
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