| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0954 |
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| Symbol | rplU |
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| ID | 5611267 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1138126 |
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| End bp | 1138437 |
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| Gene Length | 312 bp |
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| Protein Length | 103 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640931802 |
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| Product | 50S ribosomal protein L21 |
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| Protein accession | YP_001472693 |
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| Protein GI | 157374093 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0261] Ribosomal protein L21 |
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| TIGRFAM ID | [TIGR00061] ribosomal protein L21 |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.361102 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTACGCTG TTTTTCAAAG TGGTGGTAAG CAACATCGTG TTGCCGAAGG CCATACTGTT
CGTCTAGAAA AATTAGAAGT CGCTACAGGC GATACTGTTG AGTTTGACCA AGTTCTTTTG
GTTGCTGACG GTGAGACTGT TCATGTTGGT GCACCTCTAG TTGCAGGTGG TAAGGTTGTT
GCTGAAGTAG TTAGCCACGG CCGTGCTGAG AAAGTAACTA TTGTTAAGTT CCGTCGTCGT
AAGCACCACG ACAAGAAAAT GGGCCATCGT CAATGGTTCA CCGAAGTTAA AATTACGGCT
ATCAACGCTT AA
|
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| Protein sequence | MYAVFQSGGK QHRVAEGHTV RLEKLEVATG DTVEFDQVLL VADGETVHVG APLVAGGKVV
AEVVSHGRAE KVTIVKFRRR KHHDKKMGHR QWFTEVKITA INA
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