Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0931 |
Symbol | nrfA |
ID | 5611126 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1113449 |
End bp | 1114849 |
Gene Length | 1401 bp |
Protein Length | 466 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640931779 |
Product | cytochrome c552 |
Protein accession | YP_001472670 |
Protein GI | 157374070 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3303] Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit |
TIGRFAM ID | [TIGR03152] formate-dependent cytochrome c nitrite reductase, c552 subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000109321 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGAGAA ATTTAACTAA AAAATCCTTT GCATTAAGTG CATTGGTCGC TGCGAGCTTA ATGGCTTCTG GTGTGATGGC AAGCGATAAG ACTGAGCCAC GTAATGAAGA ATATAAAGAT AAGTTTTCTA AGCAATATAA CAGCTGGCAT GATACTGCAG AAAGTAAAGA AGTTGTTGAT ATGCTTGAAG AAGTGCCTAG CCTAGTCGTG TTGTGGGCAG GTTATGGCTT CGCCAAAGAT TATAATGCTC CACGTGGTCA CATGTATGCA GTGACTGACG TACGTAACAC ATTACGTACC GGCGCACCTA AGGCTGCTAC AGATGGTCCA ATGCCAATGG CATGTTGGTC TTGTAAGAGC CCTGATGTAC CGCGTGTTAT CGAAGAGCAA GGTGAAGATG GTTACTTCAC TGGTAAGTGG TATAAAGGCG GCGCTGAAAT CGTTAACACT ATCGGTTGTG GCGATTGTCA TGAAAAAGGT AAGTCTAAGT TACGTGTCTC TCGTCCATTC GCCGAGCGCG CATTTGAAAC ACTAGACACT CCATTTGCTA AGGCGTCTAA GAAAGACAAG CAGTCAATGG TTTGTGCTCA GTGTCACGTA GAGTACTACT TCGAGAAGAC TAAAGATAAG AAAGGTTTCG TTAAGTTCCC TTGGGATCAG GGCGTTACTG TTGAAGCGAT GGAAACTTAC TACGATAACC TTGAGTTTAA AGACTGGACT CATAAGGTAT CTAAGACGCC TATGCTAAAA GCACAGCATC CTGGTTATGA AACTTGGAAG CTGGGTGTAC ACGGTCAGAA CAACGTAAGC TGTACTGATT GTCACATGCC TAAAGTTAAG AATGATAAAG GTCGTAAGTA TACCGATCAT AAAGTGGGTA ACCCATTCGA TCGTTTCGAA GAGACCTGTG GTACTTGTCA TGAGCAGAGC AAAGAGTTCA TGGTTAACCT AACTAAAGAG CGTAAAGTTA AAGTTGCTGA CCTGAAAGCA CGTGCTGAAA CTCAGTTAGT TAAAGCTCAC TTCGAAGCGA AAGCTGCTTG GGATGCCGGT GCAACTGAAG CTGAAATGAA GCCTATTCTG ACTGATATCC GTCATTCACA GTGGCGCTGG GATTATGCGA CAGCCTCTCA TGGTGTTGCT GCTCACGCTC CTGATGAAGC GCTACGTGTA TTAGGTACTT CAGTAGATAA AGCGGCCGAT GCTCGCATCA AGCTAGCTCA ACTACTTGCT GTTAAAGGTG TTAAGCAACC AATTGCTTAC CCTGATACTT CTACCAAGGC TAAAGCACAA GCTGCCCTAG GTATGGATAT GAAGAAGATG AACGCTGACA AGGCTGACTT CAAGAAGAAT ACTCTTCCTA AGTGGGAAGC CGAAGCTAAG AAGCGTGAAG CGACTTACTA A
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Protein sequence | MVRNLTKKSF ALSALVAASL MASGVMASDK TEPRNEEYKD KFSKQYNSWH DTAESKEVVD MLEEVPSLVV LWAGYGFAKD YNAPRGHMYA VTDVRNTLRT GAPKAATDGP MPMACWSCKS PDVPRVIEEQ GEDGYFTGKW YKGGAEIVNT IGCGDCHEKG KSKLRVSRPF AERAFETLDT PFAKASKKDK QSMVCAQCHV EYYFEKTKDK KGFVKFPWDQ GVTVEAMETY YDNLEFKDWT HKVSKTPMLK AQHPGYETWK LGVHGQNNVS CTDCHMPKVK NDKGRKYTDH KVGNPFDRFE ETCGTCHEQS KEFMVNLTKE RKVKVADLKA RAETQLVKAH FEAKAAWDAG ATEAEMKPIL TDIRHSQWRW DYATASHGVA AHAPDEALRV LGTSVDKAAD ARIKLAQLLA VKGVKQPIAY PDTSTKAKAQ AALGMDMKKM NADKADFKKN TLPKWEAEAK KREATY
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